Job Description P0A7I4 Confidence 97.61% Date Thu Jan 5 11:05:43 GMT 2012 Rank 306 Aligned Residues 128 % Identity 19% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	.	.	.	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	.	.	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F
Template Known Secondary structure									S	S	S	S	S	S	T	T	T										.	.	T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.																.	.	.	.	.	.														.	.
Query SS confidence		.																.	.	.	.	.	.														.	.
Query Sequence		.	Y	H	D	C	L	V	N	L	L	D	T	P	G	H	E	.	.	.	.	.	.	D	F	S	E	D	T	Y	R	T	L	T	A	V	.	.	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	I	L	T	F	M	N	K	L	D
Query Conservation		.																.	.	.	.	.	.														.	.
Alig confidence		.																.	.	.	.	.	.														.	.													.																						.
Template Conservation																																																			.																						.
Template Sequence		V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	.	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	.	T	K	M	D
Template Known Secondary structure				T	T		S									S			S	S	T																		S								T	T	T	G	.	G	G	G									T	T		S	S						.			S	S
Template Predicted Secondary structure																																																			.																						.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions