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Job DescriptionP39366
Confidence99.74%DateThu Jan 5 11:59:57 GMT 2012
Rank61Aligned Residues220
% Identity10%Templated1vgya1
SCOP infoPhosphorylase/hydrolase-like Zn-dependent exopeptidases Bacterial dinuclear zinc exopeptidases
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  VQETLFSLLQHNAISGHENAVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIFAHMDEVGFMVRKIEPSGFL
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Template Sequence  SLELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHFGNTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPF
Template Known Secondary structure  TS

BTT

TTTTT


BTTB

SSSS

B




GGGSSS
TT
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Query Sequence  . . . . . . . RFERVGGPAQVTMAGSIVTLTGDKGPVMGCIGIKSYHFAKGDERTQSPSVDKLWIDI. . . . . . . . GAKDKDDA
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Template Sequence  EPAERDGRLYGRGAADXKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEP
Template Known Secondary structure  S
TTSTTTTTT
TT
SSS
SSS

TTSTT




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Query Sequence  IRMG. IQVGTPVTLYNPPQLLANDLVCSK. . . . . . . ALDDRLGCTALLGVADAISTMELDIAVYLVASVQEEFNIRGIVP
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Template Sequence  TAVDKLGDXIKNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAXAQELIELGPSNATIHQINENVRL
Template Known Secondary structure 
BSSSTTS




SSSS



S


TGGG

SB
TTTTSTT
T
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   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   222..
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Query Sequence  VLR
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Template Sequence  NDI
Template Known Secondary structure  T
Template Predicted Secondary structure 


Template SS confidence 


   359360.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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