Job Description P39366 Confidence 99.36% Date Thu Jan 5 11:59:57 GMT 2012 Rank 65 Aligned Residues 244 % Identity 19% Template c3tc8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase; PDBTitle: crystal structure of a hypothetical zn-dependent exopeptidase2 (bdi_3547) from parabacteroides distasonis atcc 8503 at 1.06 a3 resolution Resolution 1.06 Å

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		5	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.													.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	E	T	L	F	S	L	L	Q	H	.	.	.	N	A	I	S	G	H	E	N	A	V	A	D	V	M	L	C	E	F	R	R	Q	A	K	E	V	W	R	D	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	N	V	V	A	R	Y	G	S	D	K	P	D	A	L	R	L	M	I	F	A	H	M	D
Query Conservation													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																																																						.	.
Template Sequence		A	Y	A	Y	V	A	N	Q	V	A	F	G	P	R	V	P	N	T	A	A	H	K	A	C	G	D	Y	L	A	S	E	L	K	R	F	G	A	K	V	Y	Q	Q	E	A	I	L	T	A	Y	D	G	T	K	L	E	A	R	N	I	I	G	S	F	D	P	E	N	S	.	.	K	R	V	L	L	F	A	H	W	D
Template Known Secondary structure												T					T	T	S																	T	T													T	T	S													S	T	T		S	.	.	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	F	M	V	R	K	I	E	P	S	G	F	L	R	F	E	R	V	G	G	P	A	Q	V	T	M	A	G	S	I	V	T	L	T	G	D	K	G	P	V	M	G	C	I	G	I	K	S	Y	H	F	A	K	G	D	E	R	T	Q	S	P	S	V	D	K	L	W	I	D	I	G	A	K	D	K	D	D	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	P	Y	S	D	H	D	P	D	P	S	K	H	R	T	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S			T	T		S	S	G	G	G	T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	M	G	I	Q	V	G	T	P	V	T	L	Y	N	P	P	Q	L	L	A	N	D	L	V	C	S	K	A	L	D	D	R	L	G	C	T	A	L	L	G	V	A	D	A	I	S	T	M	E	L	D	I	A	V	Y	L	V	A	S	V	Q	E	E	F	N	I	R	G	I	V	P	V	L	R	R	V	K	P	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	D	G	G	S	G	V	G	A	L	L	E	I	A	R	Q	I	G	Q	K	A	P	G	I	G	I	D	I	I	F	F	D	A	E	D	Y	G	T	P	E	F	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T																	S			S	S									S		S		S			T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.										.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	I	G	I	D	I	T	P	S	C	D	T	P	D	L	H	D	Y	S	E	V	R	I	N	Q	G	V	G	I	T	C	L	N	Y	H	G	R	G	T	L	A	G	L	I	T	P	.	.	.	.	.	.	.	.	.	P	R	L	I	R	M	L	E	Q	T	A	L	E	H	N	I	P	V	Q	R	E	V	A	P
Query Conservation																																																	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	T	D	Y	T	P	D	S	W	C	L	G	T	Q	F	W	A	K	N	P	H	V	P	N	Y	T	A	E	Y	G	I	L	L	D	X	V	G	G	K	N	A	T	F	F	K	E	Q	Q	S	L	R	A	A	A	P	I	V	E	X	V	W	S	A	A	R	D	L	G	Y	G	K	Y	F	I	N	A	A
Template Known Secondary structure		.	.	.			S			T	T		S										S		S	S	T	T				S							S			B	T	T																												T		T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		301	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.									.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure					.	.	.																			.	.	.	.	.	.	.	.										.	.	.
Query SS confidence					.	.	.																			.	.	.	.	.	.	.	.										.	.	.
Query Sequence		G	V	I	.	.	.	T	E	T	G	Y	I	Q	V	E	Q	D	G	I	P	C	A	S	L	.	.	.	.	.	.	.	.	S	I	P	C	R	Y	T	H	S	.	.	.	P	A	E	V	A	S	L	R	D	L	T	D	C	I	R	L	L	T	A	L	A	G	M
Query Conservation					.	.	.																			.	.	.	.	.	.	.	.										.	.	.
Alig confidence					.	.	.										.	.								.	.	.	.	.	.	.	.										.	.	.
Template Conservation																	.	.
Template Sequence		G	G	A	I	T	D	D	H	Q	Y	V	I	S	G	R	.	.	N	I	P	S	I	D	I	I	N	Y	D	P	E	S	K	T	G	F	A	S	Y	W	H	T	Q	K	D	N	X	E	N	I	D	R	E	T	L	K	A	A	G	Q	T	V	L	E	V	I	Y	N
Template Known Secondary structure																	.	.									B			T	T	S	S	S	S	S		T	T	T	T	S	T	T		S	G	G	G	B
Template Predicted Secondary structure																	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions