Job Description P39366 Confidence 100.00% Date Thu Jan 5 11:59:57 GMT 2012 Rank 10 Aligned Residues 349 % Identity 11% Template c3pfoB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:putative acetylornithine deacetylase; PDBTitle: crystal structure of a putative acetylornithine deacetylase (rpa2325)2 from rhodopseudomonas palustris cga009 at 1.90 a resolution Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	Q	E	T	L	F	S	L	L	Q	H	N	A	I	S	G	H	E	N	A	V	A	D	V	M	L	C	E	F	R	R	Q	A	K	E	V	W	R	D	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	V	A	R	Y	G	S	D	K	P	D	A	L	R
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																																															.
Template Sequence		D	Q	V	A	F	L	Q	R	X	V	Q	F	R	S	V	R	G	E	E	A	P	Q	Q	E	W	L	A	Q	Q	F	A	D	R	G	Y	K	V	D	T	F	S	L	A	D	V	D	I	A	S	H	P	K	A	A	P	X	D	T	I	D	P	A	G	S	X	Q	V	V	A	T	A	D	S	D	G	K	G	.	R	S
Template Known Secondary structure												T	S				T	T																T	T								T	T	T	T	T	G	G	G	S	T	T					T	T			G	G	G													S	S	.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence		L	M	I	F	A	H	M	D	E	V	G	F	M	V	R	K	I	E	P	S	G	F	L	.	.	.	.	.	.	.	R	F	E	R	V	G	G	P	A	Q	V	T	M	A	G	S	I	V	T	L	T	G	D	K	G	P	V	M	G	C	I	G	I	K	S	Y	H	F	A	K	G	D	E	R	T	Q	S	P	S	V
Query Conservation																									.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	L	Q	G	H	I	D	V	V	P	E	G	P	V	D	L	W	S	D	P	P	Y	E	A	K	V	R	D	G	W	X	I	G	R	G	A	Q	D	X	K	G	G	V	S	A	X	I	F	A	L	D	A	I	R	T	A	G	Y	A	P	D	A	R	V	H	V	Q	T	V	T	E	E	E	S	T	G	N	G	A
Template Known Secondary structure																G	G	G		S	S		T	T	T					T	T					T	T	T	T	T	T																	T	T				S	S								S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		135	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	L	.	.	.	W	I	D	I	G	A	K	D	K	D	D	A	I	R	M	G	I	Q	V	G	T	P	V	T	L	Y	N	P	P	Q	L	L	A	N	D	L	V	C	S	K	A	L	D	D	R	L	G	C	T	A	L	L	G	V	A	D	A	I	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	T	L	X	R	G	Y	R	A	D	A	C	L	I	P	E	P	T	G	H	T	L	T	R	A	Q	V	G	A	V	W	F	R	L	R	V	R	G	T	P	V	H	V	A	Y	S	E	T	G	T	S	A	I	L	S	A	X	H	L	I	R	A	F	E	E	Y	T	K	E	L	N	A	Q	A	V	R	D	P	W
Template Known Secondary structure								T				S									S	S																						B	G	G	G	G	G	G	S																									G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure		.																																																										.	.	.	.	.
Query SS confidence		.																																																										.	.	.	.	.
Query Sequence		.	M	E	L	D	I	A	V	Y	L	V	A	S	V	Q	E	E	F	N	I	R	G	I	V	P	V	L	R	R	V	K	P	D	L	A	I	G	I	D	I	T	P	S	C	D	T	P	D	L	H	D	Y	S	E	V	R	I	N	.	.	.	.	.	Q	G	V	G	I	T	C	L	N	Y	H	G	R	G	T	L	A
Query Conservation		.																																																										.	.	.	.	.
Alig confidence		.																																																										.	.	.	.	.
Template Conservation
Template Sequence		F	G	Q	V	K	N	P	I	K	F	N	V	G	I	I	K	G	G	D	W	A	S	S	T	A	A	W	C	E	L	D	C	R	L	G	L	L	T	G	D	T	P	Q	E	A	X	R	G	I	E	K	C	L	A	D	A	Q	A	T	D	S	F	L	S	E	N	P	A	E	L	V	W	S	G	F	Q	A	D	P	A
Template Known Secondary structure		T	T	T	S	S	S													S		T	T	B															T	T																			T	T							S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	T	P	P	R	L	I	R	M	L	E	Q	T	A	L	E	H	N	I	P	V	Q	R	E	V	A	P	G	V	I	T	E	T	G	Y	I	Q	V	E	Q	D	G	I	P	C	A	S	L	S	I	P	C	R	Y	T	H	S	P	A	E	V	A	S	L	R	D	L	T	D	C	I	R	L	L	T	A	L	A
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		V	C	E	P	G	G	V	A	E	D	V	L	T	A	A	H	K	A	A	F	N	A	P	L	D	A	R	L	S	T	A	V	N	D	T	R	Y	Y	.	S	V	D	Y	G	I	P	A	L	C	Y	G	P	Y	G	Q	G	P	H	A	F	D	E	R	I	D	L	E	S	L	R	K	T	T	L	S	I	A	L	F	V
Template Known Secondary structure					T	T																S	S								S	S			T					.																		T	T	S	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		352	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		424	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions