Job Description P39366 Confidence 99.04% Date Thu Jan 5 11:59:57 GMT 2012 Rank 68 Aligned Residues 217 % Identity 23% Template c3pb6X_ PDB info PDB header:transferase Chain: X: PDB Molecule:glutaminyl-peptide cyclotransferase-like protein; PDBTitle: crystal structure of the catalytic domain of human golgi-resident2 glutaminyl cyclase at ph 6.5 Resolution 1.05 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																							.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	I	S	G	H	E	N	A	V	A	D	V	M	L	C	E	F	R	R	Q	.	.	A	K	E	V	W	R	D	R	.	.	.	.	.	.	.	.	.	.	.	L	G	N	V	V	A	R	Y	G	S	D	K	P	D	A	L	R	L	M	I	F	A	H	M	D	E	V	G	F	M	V	R	K	I	E	P	S	G
Query Conservation																							.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.									.	.	.	.	.	.	.	.	.	.	.															.	.																.	.	.	.	.	.	.
Template Conservation																																																										.	.																.	.	.	.	.	.	.
Template Sequence		T	P	G	S	P	G	N	L	Q	V	R	K	F	L	E	A	T	L	R	S	L	T	A	G	W	H	V	E	L	D	P	F	T	A	S	T	P	L	G	P	V	D	F	G	N	V	V	A	T	L	D	P	R	A	A	R	.	.	H	L	T	L	A	C	H	Y	D	S	K	L	F	P	P	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S																	S	T	T														T	T												S		T	T	S	S		.	.															T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.																.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	R	F	E	R	V	G	G	P	A	Q	V	T	M	A	G	S	I	V	T	L	T	G	D	K	G	P	V	M	G	C	I	G	I	K	S	Y	H	F	A	K	G	D	E	R	T	Q	S	P	S	V	D	K	L	W	I	D	I	G	A	K	D	K	D	D	A	I	R	M	G	I	Q	V	G	T	P	V	T	L
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		Y	N	P	P	Q	L	L	A	N	D	L	V	C	S	K	A	L	D	D	R	L	G	C	T	A	L	L	G	V	A	D	A	I	S	T	.	.	.	.	.	.	.	M	E	L	D	I	A	V	Y	L	V	A	S	V	Q	E	E	F	.	.	.	.	.	.	.	.	N	I	R	G	I	V	P	V	L	R	R	V	K
Query Conservation																																					.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	S	T	P	F	V	G	A	T	D	S	A	V	P	C	A	L	L	L	E	L	A	Q	A	L	D	L	E	L	S	R	A	K	K	Q	A	A	P	V	T	L	Q	L	L	F	L	D	G	E	E	A	L	K	E	W	G	P	K	D	S	L	Y	G	S	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	S						T	T	T	T														T										T	T		S									S			S		S	S			S	T	T	S	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.
Template SS confidence
										177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250											.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Query Sequence		P	D	L	A	I	G	I	D	I	T	P	S	C	D	T	P	D	L	H	D	Y	S	E	.	.	.	.	.	.	.	.	.	.	V	R	I	N	Q	G	V	G	I	T	C	L	N	Y	H	G	R	G	T	L	A	G	L	I	T	P	P	R	L	I	R	M	L	E	Q	T	A	L	E	H	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	L	A	Q	L	M	E	S	I	P	H	S	P	G	P	T	R	I	Q	A	I	E	L	F	M	L	L	D	L	L	G	A	P	N	P	T	F	Y	S	H	F	P	R	T	V	R	W	F	H	R	L	R	S	I	E	K	R	L	H	R	L	N	L	L	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	B		S	S		S	B	T	T	T	T									S		S	S	S	S			B					G	G	G																	T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
								291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																					.	.							.	.	.
Query SS confidence		.	.	.	.	.	.																																					.	.							.	.	.
Query Sequence		.	.	.	.	.	.	N	I	P	V	Q	R	E	V	A	P	G	V	I	T	E	T	G	Y	I	Q	V	E	Q	D	G	I	P	C	A	S	L	S	I	P	C	R	.	.	Y	T	H	S	P	A	.	.	.	E	V	A	S	L	R	D	L	T	D	C	I	R	L	L	T	A	L	A	G	M
Query Conservation		.	.	.	.	.	.																																					.	.							.	.	.
Alig confidence		.	.	.	.	.	.																							.	.													.	.							.	.	.
Template Conservation																														.	.
Template Sequence		S	H	P	Q	E	V	M	Y	F	Q	P	G	E	P	F	G	S	V	E	D	D	H	I	P	F	L	R	R	.	.	G	V	P	V	L	H	L	I	S	T	P	F	P	A	V	W	H	T	P	A	D	T	E	V	N	L	H	P	P	T	V	H	N	L	C	R	I	L	A	V	F	L	A	E
Template Known Secondary structure		S			S	S		S	S	B		S	S		S	S				S		T	T					T	T	.	.	T									S	S			T	T	T	T	S	T	T		S	G	G	G	S
Template Predicted Secondary structure																														.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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