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Job DescriptionP39366
Confidence100.00%DateThu Jan 5 11:59:57 GMT 2012
Rank21Aligned Residues344
% Identity17%Templatec3mruB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:aminoacyl-histidine dipeptidase; PDBTitle: crystal structure of aminoacylhistidine dipeptidase from vibrio2 alginolyticus
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50...... ...60.........70....... .
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Query Sequence  VQETLFSLLQHNAISGHENAVADVMLCEFRRQAKEVWRDRLGNVVARYGSDK. . PDALRLMIFAHMDEVGFMVRK. . . . I
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Template Sequence  LWQFFDKICSIPHPSKHEEALAQYIVTWATEQGFDVRRDPTGNVFIKKPATPGMENKKGVVLQAHIDMVPQKNEDTDHDF
Template Known Secondary structure  TTS

BTT

TTTT


TTS



SS

SB



B


B
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T
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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   7980.... .....90.. .......100.........110.........120.........130.........140
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Query Sequence  EPSGFL. . . . . . RFERVGGP. . . AQVTMAGSIVTLTGDKGPVMGCIGIKSYHFAKGDERTQSPSVDKLWID. . . . . . . . .
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Template Sequence  TQDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVLASKEIKHGPI. . . . EVLLTIDEEAGMTGAFGLEAGWLKGDILLN
Template Known Secondary structure  TTS


TTSSB


T
SS


S
....S
SSSTTS

TTS


S
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   96...100.........110.........120.........130.........140. ........150.........160.........170.
 
   141........150.........160.........170 .........180.. .......190.........200....
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Query Sequence  . . . . . . . . . . . . . IGAKDKDDAIRMGIQVGTPVTLYNPPQLLA. NDLVCSKALDDR. . LGCTALLGVADAISTMELDIAV
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Template Sequence  TDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLIGRFLAGHAQELDLRLV
Template Known Secondary structure 




TT





TT




BTTTGGGS



T
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   205.
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Query Sequence  YL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EFRGGSLRNAIPREAFVTVALPAENQDKLAELFNYYTELLKTELGKIETDIVTFNEEVATDAQVFAIADQQRFIAALNAC
Template Known Secondary structure 
S
TTB



GGGTTT






S

S
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   252.......260.........270.........280.........290.........300.........310.........320.........330.
 
   207..210.........220.........230.........240.........250.........260.........270...
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Query Sequence  . . . . . . . . . . . . . VASVQEEFNIRGIVPVLRRVKPDLAIGIDITPSCDTPDLHDYSEVRINQGVGITCLNYHGRGTLAGL
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Template Sequence  PNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSLIDSGRSQVEGMLQSVAELAGAQ. . . . . . IEFSGAYPGWKP
Template Known Secondary structure 

S


SSSTT
TTSSTT
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B

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   332.......340.........350.........360.........370.........380.........390... ......400.....
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  ITPPRLIRMLEQTALEHNIPVQREVAPGVITETGYIQVEQDGIPCASLSIPCRYTHSPAEVASLRDLTDCIRLLTALAGM
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Template Sequence  DADSEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDMVSFGPTIKFPHSPDEKVKIDTVQLFWDQMVALLEA
Template Known Secondary structure 
SS
TTTTTT

S

SS

GGGGGGSSSS





STTSTT
T
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   406...410.........420.........430.........440.........450.........460.........470.........480.....
 
   354....
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Query Sequence  SAAHF
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Template Conservation 
    
Template Sequence  IPEKA
Template Known Secondary structure 

B

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   486...490
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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