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Job DescriptionP39366
Confidence100.00%DateThu Jan 5 11:59:57 GMT 2012
Rank3Aligned Residues326
% Identity28%Templatec3kl9F_
PDB info PDB header:hydrolaseChain: F: PDB Molecule:glutamyl aminopeptidase; PDBTitle: crystal structure of pepa from streptococcus pneumoniae
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  SVQETLFSLLQHNAISGHENAVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIFAHMDEVGFMVRKIEPSGF
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Template Sequence  TLFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSEIKPDGT
Template Known Secondary structure 
TS

BTT

GGG
S
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STT



B

TTS
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  LRFERVGGPAQVTMAGSIVTLTGDKGPVMGCIGIKSYHFAKGDERTQSPSVDKLWIDIGAKDKDDAIRMGIQVGTPVTLY
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Template Sequence  FRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVI. . . . . . . . . . . . . . SGPAIADIVFDGGFADKAEAESFGIRPGDTIVPD
Template Known Secondary structure  S


GGG
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GGGS



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Query Sequence  NPPQLLANDLV. CSKALDDRLGCTALLGVADAISTMELDIAVYLVASVQEEFNIRGIVPVLRRVKPDLAIGIDITPSCDT
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Template Sequence  SSAILTANEKNIISKAWDNRYGVLMVSELAEALSGQKLGNELYLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPAGDV
Template Known Secondary structure 



TTSSS
TSS


SSS

TTTS

S

GG
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  PDLHDYSEVRINQGVGITCLNYHGRGTLAGLITPPRLIRMLEQTALEHNIPVQREVAPGVITETGYIQVEQDGIPCASLS
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Template Sequence  YGGQ. . . . . . GKIGDGTLIRFYDPGHLL. . . . . LPGMKDFLLTTAEEAGIKYQY. YCGKGGTDAGAAHLKNGGVPSTTIG
Template Known Secondary structure  GT
S......

TTS
TT
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TT

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TTTSTT


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   244... ..250.........260..... ....270.........280...... ...290.........300.........310.
 
   323......330.........340.........350.....
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Query Sequence  IPCRYTHSPAEVASLRDLTDCIRLLTALAGMSA
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Template Sequence  VCARYIHSHQTLYAMDDFLEAQAFLQALVKKLD
Template Known Secondary structure  BT
SSS

S
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   312.......320.........330.........340....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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