Job Description P39366 Confidence 98.83% Date Thu Jan 5 11:59:57 GMT 2012 Rank 70 Aligned Residues 341 % Identity 16% Template c2ek8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1 Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.															.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	Q	E	T	L	F	S	L	L	Q	H	N	A	I	S	G	H	.	.	E	N	A	V	A	D	V	M	L	C	E	F	R	R	Q	A	K	E	V	W	R	D	R	L	G	N	V	V	A	R	Y	G	S	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	A	L	R	L	M	I	F	A	H
Query Conservation																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	Y	N	T	I	Q	F	L	S	Q	A	P	R	V	A	G	S	P	E	E	L	K	A	V	R	Y	I	E	Q	Q	F	K	S	Y	G	Y	H	V	E	V	Q	P	F	Q	F	E	G	Y	T	A	P	S	E	V	T	L	K	I	G	T	E	K	K	E	G	E	A	F	T	Y	S	P	N	S	D	V	T	A	E
Template Known Secondary structure											T	T	S				T	T	S																	T	T																	S							T	T									B	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																		.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	E	V	G	F	M	V	R	K	I	E	P	S	G	F	L	R	F	E	R	V	G	G	P	A	Q	V	T	M	A	G	S	I	V	T	L	T	G	D	K	G	P	V	M	G	C	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	S	Y	H	F	A	K	G	D	E	R	T	Q
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	Y	V	G	L	G	T	T	A	D	V	A	G	K	D	L	N	G	K	I	A	L	I	Q	R	G	N	I	S	F	A	D	K	V	R	N	A	A	K	Q	G	A	K	A	V	I	I	Y	N	N	T	D	G	K	L	N	G	T	L	G	G	S	D	A	S	F	V	A	A	V	G	I	T	K	Q	E	G	D	A
Template Known Secondary structure						T	T			T	T	T	T	T	T	S			T	T	S								S	S												T	T		S							S	S	S	S					B		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		S	P	S	V	D	K	L	W	I	D	I	G	A	K	D	K	D	D	A	I	R	M	G	I	Q	V	G	T	P	V	T	L	Y	N	P	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	L	A	N	D	L	V	.	.	.	C	S	K	A	L	D	D	R	L	G	C	T	A	L	L	G	V	A	D	A	I	S
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		L	A	A	N	L	R	A	G	E	K	I	T	A	T	V	K	V	A	G	A	E	V	K	T	L	T	S	H	N	V	I	A	T	K	K	P	D	A	N	K	K	N	T	N	D	I	I	I	I	G	S	H	H	D	S	V	E	K	A	P	G	A	N	D	D	A	S	G	V	A	V	T	L	E	L	A	R	V	M	S
Template Known Secondary structure								T	T											S																			S	S	T	T																T	T				T	T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	E	L	D	I	A	V	Y	L	V	A	S	V	Q	E	E	F	N	I	R	G	I	V	P	V	L	R	R	V	K	P	D	L	A	I	G	I	D	I	T	P	S	C	D	T	P	D	L	H	D	Y	S	E	V	R	I	N	Q	G	V	G	I	T	C	L	N	Y	H	G	R	G	T	L	A	G	L	I	T	P
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		K	L	K	T	D	T	E	L	R	F	I	T	F	G	A	E	E	N	G	L	I	G	S	K	K	Y	A	A	S	L	S	E	D	E	I	K	R	T	I	G	M	F	Q	L	D	.	.	.	.	.	.	.	.	.	.	M	V	G	S	K	D	A	G	D	L	I	M	Y	T	I	D	G	K	K	N	R	.	.	.	.
Template Known Secondary structure		T	S			S	S								S	S	S	T	T	T	S								T	T																	.	.	.	.	.	.	.	.	.	.	S			B	T	T	S								T	T	S					.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.											.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																															.	.											.	.	.
Query SS confidence																																															.	.											.	.	.
Query Sequence		P	R	L	I	R	M	L	E	Q	T	A	L	E	H	N	I	P	V	Q	R	E	V	A	P	G	V	I	T	E	T	G	Y	I	Q	V	E	Q	D	G	I	P	C	A	S	L	.	.	S	I	P	C	R	Y	T	H	S	P	.	.	.	A	E	V	A	S	L	R	D	L	T	D	C	I	R	L	L	T	A	L	A
Query Conservation																																															.	.											.	.	.
Alig confidence		.	.																		.	.																.	.								.	.											.	.	.
Template Conservation		.	.																		.	.																.	.
Template Sequence		.	.	V	T	D	L	G	A	A	A	S	S	R	L	S	G	V	L	P	.	.	Y	G	Q	E	G	R	S	D	H	E	S	F	H	A	L	.	.	G	I	P	A	A	L	F	I	H	A	P	V	E	P	W	Y	H	T	P	N	D	T	L	D	K	I	S	K	E	K	L	D	N	V	A	D	I	V	G	S	A	V
Template Known Secondary structure		.	.													T	S				.	.						S	S	T						T	T	.	.	T										S			T	T	T	T	S	T	T			G	G	G	B
Template Predicted Secondary structure		.	.																		.	.																.	.
Template SS confidence
				323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	S	A	A	H	F	P	V	E	P	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	A	A	R	P	G	E	L	V	I	E	P
Template Known Secondary structure						S	S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions