Job Description P39366 Confidence 100.00% Date Thu Jan 5 11:59:57 GMT 2012 Rank 12 Aligned Residues 347 % Identity 11% Template c1vgyB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	Q	E	T	L	F	S	L	L	Q	H	N	A	I	S	G	H	E	N	A	V	A	D	V	M	L	C	E	F	R	R	Q	A	K	E	V	W	R	D	R	L	G	N	V	V	A	R	Y	G	S	D	K	P	D	A	L	R	L	M	I	F	A	H	M	D	E	V	G	F	M	V	R	K	I	E	P	S	G	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		S	L	E	L	A	K	E	L	I	S	R	P	S	V	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	G	F	A	A	E	E	X	H	F	G	N	T	K	N	I	W	L	R	R	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V	V	P	T	G	P	V	E	K	W	D	S	P	P	F
Template Known Secondary structure											T	S			B	T	T			T	T											T	T	T								B	T	T	B									S	S	S	S										B					S	G	G	G	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
							83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.														.	.	.
Predicted Secondary structure		.	.	.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	F	L	R	F	E	R	V	G	G	P	A	Q	V	T	M	A	G	S	I	V	T	L	T	G	D	K	G	P	V	M	G	C	I	G	I	K	S	Y	H	F	A	K	G	D	E	R	T	Q	S	P	S	V	D	K	L	W	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	K
Query Conservation		.	.	.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	A	E	R	D	G	R	L	Y	G	R	G	A	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A	L	D	G	T	T	K	V	V	D	V	L	K	A	R	D	E	L	I	D	Y	C	I	V	G	E	P
Template Known Secondary structure		S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	D	D	A	I	R	M	G	I	Q	V	G	T	P	V	T	L	Y	N	P	P	Q	L	L	A	N	D	L	V	C	S	K	A	L	D	D	R	L	G	C	T	A	L	L	G	V	A	D	A	I	S	T	M	E	L	D	I	A	V	Y	L	V	A	S	V	Q	E	E	F	N	I	R	G	I	V	P	V	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	V	D	K	L	G	D	X	I	K	N	G	R	R	G	S	L	S	G	N	L	T	V	K	G	K	Q	G	H	I	A	Y	P	H	L	A	I	N	P	V	H	T	F	A	P	A	L	L	E	L	T	Q	E	V	W	D	E	G	N	E	Y	F	P	P	T	S	F	Q	I	S	N	I	N	G	G	T	G	A	T
Template Known Secondary structure			B	S	S	S	T	T	S																			B				T	T		G	G	G		B																							S	S																S		T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		225	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		R	V	K	P	D	L	A	.	.	.	I	G	I	D	I	T	P	S	C	D	T	P	D	L	H	D	Y	S	E	V	R	I	N	Q	G	V	G	I	T	C	L	N	Y	H	G	R	G	T	L	A	G	L	I	T	P	P	R	L	I	R	M	L	E	Q	T	A	L	E	H	N	I	P	V	Q	R	E	V	A	P	G
Query Conservation									.	.	.
Alig confidence									.	.	.																																																																		.
Template Conservation																																																																													.
Template Sequence		N	V	I	P	G	E	L	N	V	K	F	N	F	R	F	S	T	E	S	T	E	A	G	L	K	Q	R	V	H	A	I	L	D	K	H	G	V	Q	Y	D	L	Q	W	S	C	S	G	Q	P	F	L	T	Q	A	G	K	L	T	D	V	A	R	A	A	I	A	E	T	C	G	I	E	A	E	L	.	S	T	T	G
Template Known Secondary structure		T				S												T	T	S																T	T																		S	S															S	S					.				S
Template Predicted Secondary structure																																																																													.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	T	E	T	G	Y	I	Q	V	E	Q	D	G	I	P	C	A	S	L	S	I	P	C	R	Y	T	H	S	P	A	E	V	A	S	L	R	D	L	T	D	C	I	R	L	L	T	A	L	A	G	M	S
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		G	T	S	D	G	R	F	I	.	.	K	A	X	A	Q	E	L	I	E	L	G	P	S	N	A	T	I	H	Q	I	N	E	N	V	R	L	N	D	I	P	K	L	S	A	V	Y	E	G	I	L	V	R	L
Template Known Secondary structure					T					.	.	G	G	G									S	B		T	T	T	T	S	T	T					T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		325	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions