Job Description P76044 Confidence 99.98% Date Thu Jan 5 12:17:47 GMT 2012 Rank 29 Aligned Residues 239 % Identity 19% Template c3aamA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Resolution 1.58 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.										.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		K	I	G	T	Q	N	Q	A	F	F	P	E	N	I	L	E	K	F	R	Y	I	K	E	M	G	F	D	G	F	E	I	D	G	K	L	.	.	.	.	.	.	.	.	.	L	V	N	N	I	E	E	V	K	A	A	I	K	E	T	G	L	P	V	T	T	A	C	G	G	Y	D	G	W	I	G	D	F	I	E	E
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																																														.
Template Sequence		R	Y	G	F	H	L	S	I	A	G	K	K	G	V	A	G	A	V	E	E	A	T	A	L	G	L	T	A	F	Q	I	F	A	K	S	P	R	S	W	R	P	R	A	L	S	P	A	E	V	E	A	F	R	A	L	R	E	A	S	G	G	L	P	A	V	I	H	A	S	Y	L	V	N	L	G	A	.	E	G	E
Template Known Secondary structure						B					S	T	T													T		S						S	S		T	T			S																			T	T										T	T			T	T		.	S	S	T
Template Predicted Secondary structure																																																																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	N	G	L	K	Q	I	E	R	I	L	E	A	L	A	E	V	G	G	K	G	I	V	V	P	A	A	W	G	M	F	T	F	R	L	P	P	M	T	S	P	R	S	L	D	G	D	R	K	M	V	S	D	S	L	R	V	L	E	Q	V	A	A	R	T	G	T	V	V	Y	L	E	P	L	N	R	Y	Q
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	E	K	S	V	A	S	L	A	D	D	L	E	K	A	A	L	L	G	V	E	Y	V	V	V	H	P	G	S	G	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	V	K	E	G	A	L	K	A	L	R	L	A	G	V	R	S	R	P	V	L	L	V	E	N	T	A	G	G	G
Template Known Secondary structure																					T										B	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T			S	S	S											T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210										.	.	.	.
Predicted Secondary structure																																							.	.	.	.										.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.										.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		D	H	M	I	N	T	L	A	D	A	R	R	Y	I	V	E	N	D	L	K	H	V	Q	I	I	G	D	F	Y	H	M	N	I	E	E	D	N	.	.	.	.	L	A	Q	A	L	H	D	N	R	.	.	.	.	.	D	L	L	G	H	V	H	I	A	D	N	H	.	.	.	.	.	.	.	.	.	R	Y	Q	P
Query Conservation																																							.	.	.	.										.	.	.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																				.	.	.	.										.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		E	K	V	G	A	R	F	E	E	L	A	W	L	V	A	.	.	.	D	T	P	L	Q	V	C	L	D	T	C	H	A	Y	A	A	G	Y	D	V	A	E	D	P	L	G	V	L	D	A	L	D	R	A	V	G	L	E	R	V	P	V	V	H	L	N	D	S	V	G	G	L	G	S	R	V	D	H	H	A	H	L
Template Known Secondary structure		T	B	S			S									T	.	.	.	T	S	S														T			T	T	T													T		G	G	G										S	S		T	T									T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		G	S	G	T	L	D	F	H	A	L	F	E	Q	L	R	A	D	N	Y	Q	G	.	Y	V	V	Y	E	G	R	I	R	A	E	D	P	A	Q	A	Y	R	D	S	L	A	W	L	R	T
Query Conservation																							.
Alig confidence								.															.
Template Conservation								.
Template Sequence		L	Q	G	K	I	G	.	E	G	L	K	R	V	F	L	D	P	R	L	K	D	R	V	F	I	L	E	T	P	R	G	P	E	E	D	A	W	N	L	R	V	F	R	A	W	L	E	E
Template Known Secondary structure		T	S	S	S	S	T	.	T							T		G	G	G	T	T	S						S			S																T	T
Template Predicted Secondary structure								.
Template SS confidence
		223	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions