Job Description P76044 Confidence 96.90% Date Thu Jan 5 12:17:47 GMT 2012 Rank 53 Aligned Residues 207 % Identity 15% Template c1ydnA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.									.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.												.	.	.																	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.												.	.	.																	.	.	.	.	.	.
Query Sequence		K	I	G	T	Q	N	Q	A	F	F	P	.	.	.	.	.	.	.	.	E	N	I	L	E	K	F	R	Y	I	K	.	.	.	E	M	G	F	D	G	F	E	I	D	G	K	L	L	V	N	.	.	.	.	.	.	N	I	E	E	V	K	A	A	I	K	E	T	G	L	P	V	T	T	A	C	G	G	Y	D	G
Query Conservation													.	.	.	.	.	.	.	.												.	.	.																	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.												.	.	.																	.	.	.	.	.	.																								.	.
Template Conservation																																																																																.	.
Template Sequence		H	V	E	I	V	E	X	A	A	R	D	G	L	Q	N	E	K	R	F	V	P	T	A	D	K	I	A	L	I	N	R	L	S	D	C	G	Y	A	R	I	E	A	T	S	F	V	S	P	K	W	V	P	Q	L	A	D	S	R	E	V	X	A	G	I	R	R	A	D	G	V	R	Y	S	V	L	V	P	N	.	.
Template Known Secondary structure		B							T	T	T					T	S	S	S															T	T	T	T		S								S		T	T	T		G	G	G	T	T								S				S	S	S							S	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	G	D	F	I	E	E	R	R	L	N	G	L	K	Q	I	E	R	I	L	E	A	L	A	E	V	G	G	K	G	I	V	V	P	A	A	W	G	M	F	T	F	R	L	P	P	M	T	S	P	R	S	L	D	G	D	R	K	M	V	S	D	S	L	R	V	L	E	Q	V	A	A	R	T	G	T	V	V	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	K	G	Y	E	A	A	A	A	A	H	A	D	E	I	A	V	F	I	.	.	.	.	.	.	.	S	A	S	E	G	F	S	K	A	N	I	N	C	T	I	A	E	S	I	E	R	L	S	P	V	I	G	A	A	I	N	D	G	L	A	I	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		S							.	.	.	.	.	.	.		S									T	S	S																			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
																			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		145	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure									.	.	.	.	.																																							.	.																						.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																																							.	.																						.	.	.	.	.	.	.
Query Sequence		L	E	P	L	N	R	Y	.	.	.	.	.	Q	D	H	M	I	N	T	L	A	D	A	R	R	Y	I	V	E	N	D	L	K	H	V	Q	I	I	G	D	F	Y	H	M	N	I	E	E	D	N	.	.	L	A	Q	A	L	H	D	N	R	D	L	L	G	H	V	H	I	A	D	N	H	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.																																							.	.																						.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																																							.	.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	V	S	C	V	V	E	C	P	Y	D	G	P	V	T	P	Q	A	V	A	S	V	T	E	Q	L	F	S	L	G	C	H	E	V	S	L	G	D	T	I	G	R	G	T	P	D	T	V	A	A	X	L	D	A	V	L	A	I	A	P	A	H	S	L	A	G	H	Y	H	D	T	G	G	R	A	L	D	N	I
Template Known Secondary structure							S	S			T	T	T																			T		S							T	T	S																T	T	S		G	G	G						B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
																211	.	.	.	.	.									.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	Q	P	G	S	.	.	.	.	.	.	.	.	G	T	L	D	F	H	A	L	F	E	Q	L	R	A	D	N	Y	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	S	L	E	K	G	L	R	V	F	D	A	S	V	G	G	L	G	G	C	P	F	A	P	G	A	K	G	N	V	D	T	V	A	V	V	E	X	L	H	E	X	G	F	E
Template Known Secondary structure								T							B	T	T			S		B	T	T	B	T	T	S			B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions