Job Description P00909 Confidence 99.00% Date Thu Jan 5 10:57:09 GMT 2012 Rank 65 Aligned Residues 193 % Identity 17% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.																						.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	D	A	L	Q	G	A	R	T	A	F	I	L	E	C	K	K	A	S	P	S	K	G	V	I	R	D	D	F	D	P	A	R	I	A	A	I	Y	.	K	H	Y	A	S	A	I	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	E	K	Y	F	Q	G	S
Query Conservation																																									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.												.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	.	.	.	.	.	.	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C
Template Known Secondary structure									T	B									T	T	S	S		.	.	.	.	.	.														T	T		S	S										T	T																T	T
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		97	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure												.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	F	L	P	I	V	S	Q	I	.	A	P	Q	P	I	L	C	.	.	.	.	.	.	.	.	.	.	.	.	K	D	F	I	I	D	P	Y	Q	I	Y	L	A	R	Y	Y	Q	A	D	A	C	L	L	M	L	S	V	L	D	D	D	Q	Y	R	Q	L	A	A	V	A	H	S	L	E	M	G	V	L	T	E
Query Conservation												.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.								.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.																	.	.
Template Conservation																																			.	.	.	.	.	.																	.	.
Template Sequence		F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	.	.	.	.	.	.	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	.	.	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I
Template Known Secondary structure													T	T	S													T	T						.	.	.	.	.	.								T							T	T	.	.	S		G	G	G											T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.																	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
					164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																															.
Query SS confidence		.	.	.																																																															.
Query Sequence		.	.	.	V	S	N	E	E	E	Q	E	R	A	I	A	L	G	A	K	V	V	G	I	N	N	R	D	L	R	D	L	S	I	D	L	N	R	T	R	E	L	A	P	K	L	G	H	N	V	T	V	I	S	E	S	G	I	N	T	Y	A	Q	V	R	E	.	L	S	H	F	A	N	G	F	L	I	G	S	A	L
Query Conservation		.	.	.																																																															.
Alig confidence		.	.	.																												.	.	.	.	.											.	.																			.
Template Conservation																																.	.	.	.	.											.	.
Template Sequence		A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	P	V	H	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	.	.	A	P	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V
Template Known Secondary structure				T	T			S												S												.	.	.	.	.									T	T	.	.								S	S			S										T	T		S					S	S
Template Predicted Secondary structure																																.	.	.	.	.											.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		240	.						.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		M	A	.	.	.	.	.	H	D	D	L	H	A	A	V	R	R	V
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.
Template Conservation
Template Sequence		V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L
Template Known Secondary structure								T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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