Job Description P00909 Confidence 72.21% Date Thu Jan 5 10:57:09 GMT 2012 Rank 295 Aligned Residues 196 % Identity 14% Template c3ju2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 Resolution 1.80 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																	.	.	.	.	.	.
Predicted Secondary structure																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	D	D	F	D	P	A	R	I	A	A	I	Y	.	K	H	Y	A	S	A	I	S	V	L	T	D	E	K	Y	F	Q	G	S	F	N	F	L	P	I	V	S	Q	I	A	P	Q	P	I	L	C	K	D	F	I	I	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	I	Y	L	A
Query Conservation																.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		I	R	E	Q	C	G	F	A	E	A	V	D	I	C	L	K	H	G	I	T	A	I	A	P	W	R	D	Q	V	.	A	A	I	G	L	G	E	A	G	R	I	V	R	A	N	G	L	K	L	T	G	L	C	R	G	G	F	F	P	A	P	D	A	S	G	R	E	K	A	I	D	D	N	R	R	A	V	D	E	A
Template Known Secondary structure		G	T	T	T													T	T							B					.															T	T				S											S	S
Template Predicted Secondary structure																															.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.													.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Y	Y	Q	A	D	A	C	L	L	M	L	S	V	L	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	Y	R	Q	L	A	A	V	A	H	S	L	E	M	G	V	L	T	E	V	S	N	E	.	.	.	.	.	.	.	.	.	.	.	.	E	E	Q	E	R	A	I	A	L	G	A	K	V	V
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	L	G	A	D	C	L	V	L	V	A	G	G	L	P	G	G	S	K	N	I	D	A	A	R	R	M	V	V	E	G	I	A	A	V	L	P	H	A	R	A	A	G	V	P	L	A	I	E	P	L	H	P	M	Y	A	A	D	R	A	C	V	N	T	L	G	Q	A	L	D	I	C	E	T	L	G	P	G	V
Template Known Secondary structure					T	B	S							B				T	T																										T										G	G	G	T	T	T	T	B	S																T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.
Query Sequence		G	I	N	N	R	D	L	R	D	L	S	I	D	L	N	R	T	R	E	L	A	P	K	L	G	H	N	V	T	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	S	G	I	N	T	Y	A	Q	V	R	E	L	S	H	.	F	A	N	G	F	L	I	G	S	A	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.
Template Conservation
Template Sequence		G	V	A	I	D	V	Y	H	V	W	W	D	P	D	L	A	N	Q	I	A	R	A	G	K	M	K	A	I	L	A	H	H	I	C	D	W	L	V	P	T	K	D	M	L	T	D	R	G	M	M	G	D	G	V	I	D	L	K	G	I	R	R	R	I	E	A	A	G	F	H	G	A	Q	E	V	E	I	F	S	A
Template Known Secondary structure											T	T		T	T											T	T									B			S	S				S	S	S	B		B		T	T	S	S	S													T	T											B	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
			239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	M	A	H	D	D	L	H	A	A	V	R	R	V	L	L	G	E	N	K	V	C
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	N	W	W	K	R	P	A	D	E	V	I	A	T	C	V	E	R	Y	R	N	C	C
Template Known Secondary structure		T	T	G	G	G	S																	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions