Job Description P00909 Confidence 99.28% Date Thu Jan 5 10:57:09 GMT 2012 Rank 52 Aligned Residues 203 % Identity 16% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.																						.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	D	A	L	Q	G	A	R	T	A	F	I	L	E	C	K	K	A	S	P	S	K	G	V	I	R	D	D	F	D	P	A	R	I	A	A	I	Y	K	.	H	Y	A	S	A	I	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	E	K	Y	F	Q	G	S
Query Conservation																																										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.													.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		F	T	E	L	K	E	K	R	E	K	A	L	V	S	Y	L	M	V	G	Y	P	D	.	.	.	.	.	.	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V
Template Known Secondary structure									T	B									T	T	S	S		.	.	.	.	.	.														T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		97	.	.	100	.	.	.	.	.	.		.	.	.	110		.	.	.	.	.	.		.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.
Predicted Secondary structure												.					.							.							.	.	.	.																																											.	.	.
Query SS confidence												.					.							.							.	.	.	.																																											.	.	.
Query Sequence		F	N	F	L	P	I	V	S	Q	I	.	A	P	Q	P	.	I	L	C	K	D	F	.	I	I	D	P	Y	Q	.	.	.	.	I	Y	L	A	R	Y	Y	Q	A	D	A	C	L	L	M	L	S	V	L	D	D	D	Q	Y	R	Q	L	A	A	V	A	H	S	L	E	M	G	V	L	T	E	V	.	.	.	S	N
Query Conservation												.					.							.							.	.	.	.																																											.	.	.
Alig confidence												.					.							.							.	.	.	.																	.	.																									.	.	.
Template Conservation																																																			.	.
Template Sequence		L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	.	.	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T
Template Known Secondary structure													T	T	S																										T	T							T	T	.	.																T	T									T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		E	E	E	Q	E	R	A	I	A	L	G	A	K	V	V	G	I	N	N	R	D	L	R	D	L	S	I	D	L	N	R	T	R	E	L	A	P	K	L	G	H	N	V	T	V	I	S	E	S	G	I	N	T	Y	A	Q	V	R	E	L	S	H	F	A	N	G	F	L	I	G	S	A	L	M	A	H	.	.	D	D
Query Conservation																																																																														.	.
Alig confidence																											.	.													.	.																																				.	.
Template Conservation																											.	.													.	.
Template Sequence		R	K	R	I	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	.	.	I	K	K	K	V	E	E	Y	R	E	L	C	.	.	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	E	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K
Template Known Secondary structure													S	S						S	S						.	.													.	.		S						S	S			S									T	T	S	S														T	T
Template Predicted Secondary structure																											.	.													.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		245	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	A	A	V	R	R	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	E	D	L	G	N	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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