Job Description P00909 Confidence 97.86% Date Thu Jan 5 10:57:09 GMT 2012 Rank 144 Aligned Residues 170 % Identity 17% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		69	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.															.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		D	P	A	R	I	A	A	I	Y	K	.	H	Y	A	S	A	I	S	V	L	T	D	E	K	Y	F	Q	G	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	L	P	I	V	S	Q	I	A	P	Q	P	I	L	C	K	.	.	.	D	F	I	I	D	P	Y	Q	I	Y	L	A	R	Y	Y	Q
Query Conservation												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	N	V	T	D	I	V	S	I	A	R	A	A	K	E	G	G
Template Known Secondary structure													T	T		S										S	S	G	G	G	G	T		T																						S	S								S		S	S													T
Template Predicted Secondary structure
Template SS confidence
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	C	L	L	M	L	S	V	L	D	D	D	Q	Y	R	Q	L	A	A	V	A	H	S	L	E	M	G	V	L	T	E	V	S	N	E	E	E	Q	E	R	A	I	A	L	G	A	K	V	V	G	I	N	N	R	D	L	R	D	L	S	I	D	L	N	R	T	R	E	L	A	P	K	L	G	H	N	V	T
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																.
Template Sequence		A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R	P	.	.	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	.	F	P
Template Known Secondary structure			S														B		T	T	S		B	S	S		B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B								S	G	G	G			.	.													S	T	T	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																.
Template SS confidence
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.																	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.			.	.	.	.	.	.	.	780	.	.	.	.	.	.	.		.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		V	I	S	E	S	G	I	N	T	Y	A	Q	V	.	R	E	L	S	H	F	A	N	G	F	L	I	G	S	A	L	M	A	H	D	D	L	H	A	A	V	R	R	V	L	L	G	E	N	K	V
Query Conservation															.
Alig confidence															.																					.	.
Template Conservation																																				.	.
Template Sequence		I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	.	.	F	T	V	I	Q	D	Y	C	T	G	L	K	A	L
Template Known Secondary structure						S	S			S										T	T		S					S					T	S		.	.	T	T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.			.	.	.	.	.	.	830	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions