Job Description P00909 Confidence 95.58% Date Thu Jan 5 10:57:09 GMT 2012 Rank 188 Aligned Residues 154 % Identity 12% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		69	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.																	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.			.	.	110	.	.	.	.					.	.	.
Predicted Secondary structure											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.	.								.	.	.	.
Query SS confidence											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.	.								.	.	.	.
Query Sequence		D	P	A	R	I	A	A	I	Y	.	K	H	Y	A	S	A	I	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	E	K	Y	F	Q	G	S	F	N	F	.	.	.	.	.	.	.	.	L	P	I	V	S	Q	I	A	.	.	P	Q	P	I	L	C	K	.	.	.	.	D	F	I
Query Conservation											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.	.								.	.	.	.
Alig confidence											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.	.								.	.	.	.
Template Conservation
Template Sequence		F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y
Template Known Secondary structure													T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		I	D	P	Y	Q	I	Y	L	A	R	Y	Y	Q	A	D	A	C	L	L	M	L	S	V	L	D	D	D	Q	Y	R	Q	L	A	A	V	A	H	S	L	E	M	G	V	L	T	E	V	S	N	E	E	E	Q	E	R	A	I	A	L	G	A	K	V	V	G	I	N	N	R	D	L	R	D	L	S	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S			T	T	T										T	T	T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		S	T	T	G	G	G	T	S			T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.																				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
						193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.	.	.	.																																.							.
Query SS confidence		.	.	.	.																																.							.
Query Sequence		.	.	.	.	I	D	L	N	R	T	R	E	L	A	P	K	L	G	H	N	V	T	V	I	S	E	S	G	I	N	T	Y	A	Q	V	.	R	E	L	S	H	F	.	A	N	G	F	L	I	G	S	A	L	M	A	H	D	D	L	H	A	A	V	R	R	V	L	L	G	E	N	K	V	C
Query Conservation		.	.	.	.																																.							.
Alig confidence		.	.	.	.														.	.																	.							.
Template Conservation																			.	.
Template Sequence		Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	.	.	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	D	P	F	L	P	Q	K	V	E	Q	G	R	Y	D	D	I	R	V	C
Template Known Secondary structure				T	T	T	T									T	T		.	.	S	S						S														T	T	S		S	B				S							T	T							T	T		G	G	G
Template Predicted Secondary structure																			.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions