Job Description P45564 Confidence 23.92% Date Thu Jan 5 12:03:17 GMT 2012 Rank 18 Aligned Residues 110 % Identity 15% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		134	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.													.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure											.																			.	.							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence											.																			.	.							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		Y	G	I	G	Y	N	F	T	G	.	S	G	W	W	F	K	P	F	F	A	K	R	Y	T	D	Q	T	Y	.	.	Y	T	G	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	A	G	W	V	A	G	Y	N	F	M	L	G	S	.	.	.	.	.	E	K	F	T	L	T	N	W	N	E	Y	E
Query Conservation											.																			.	.							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence											.																			.	.							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.												.
Template Conservation																																																																																	.
Template Sequence		L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	.
Template Known Secondary structure						B					G	G	G																						S	S	S																										T	T	S																.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		868	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	R	D	A	T	Y	A	A	G	N	G	G	K	E	G	L	N	G	A	V	A	L	W	W	N	A	T	S	H	I	T	T	G	I	Q	Y	R	Y	A	D	D	K	L	G	E	D	F	Y	Q	D	A	I	I	Y	S	I	K	F	N	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																.	.
Template Conservation		.	.	.	.	.	.	.	.																																.	.
Template Sequence		.	.	.	.	.	.	.	.	K	S	T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	.	.	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		.	.	.	.	.	.	.	.						B														G	G	G	B									.	.				S	S													B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																.	.
Template SS confidence
										947	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.			.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions