Job Description P45564 Confidence 49.19% Date Thu Jan 5 12:03:17 GMT 2012 Rank 16 Aligned Residues 79 % Identity 20% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Y	N	F	T	G	S	G	W	W	F	K	P	F	F	A	K	R	Y	T	D	Q	T	Y	Y	T	G	D	N	G	Y	V	A	G	W	V	A	G	Y	N	F	M	L	G	S	E	K	F	T	L	T	N	W	N	E	Y	E	F	D	R	D	A	T	Y	A	A	G	N	G	G	K	E	G	L	N	G	A	V	A
Query Conservation
Alig confidence																									.	.	.	.	.	.														.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.														.	.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	.	.	.	.	.	.	N	D	V	Q	V	E	V	N	Y	A	I	K	L	.	.	.	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	.	.	.	.	.	.	.	.	.	G	T	R	Y	G	P	Y	V	K
Template Known Secondary structure									T	T	S														.	.	.	.	.	.													S	.	.	.	S	S	S													T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.														.	.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.										.	.	.	.	.	.	.	80	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	W	N	A	T	S	H	I	T	T	G	I	Q	Y	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y
Template Known Secondary structure							S	S	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions