Job Description P36995 Confidence 45.55% Date Thu Jan 5 11:54:08 GMT 2012 Rank 62 Aligned Residues 52 % Identity 17% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	N	K	M	T	G	L	V	K	W	F	N	A	D	K	G	F	G	F	I	S	P	V	D	G	S	K	D	V	F	V	H	F	S	A	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	N	Y	R	T	L	F	E	G	Q	K	V	T	F	S	I	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.								.
Template Sequence		K	G	E	V	V	D	A	V	V	T	Q	V	N	K	.	.	.	V	G	L	F	T	E	I	.	G	P	M	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V
Template Known Secondary structure		T	T												T	.	.	.	T							.	T	T							G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T
Template Predicted Secondary structure																.	.	.								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions