Return to main results Retrieve Phyre Job Id

Job DescriptionP36995
Confidence99.64%DateThu Jan 5 11:54:08 GMT 2012
Rank15Aligned Residues66
% Identity29%Templatec1x65A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60. ........70.
Predicted Secondary structure 



























...


Query SS confidence 



























































. . .









Query Sequence  SNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKG. . . PAAANVIITD
Query Conservation    
  
 

     





  
    


 
 
         
  
  
 
      

...  
  
   
Alig confidence 












..





















..




















...









Template Conservation    
  
 
   
 ..




       




 
   ..    
  

 
 
 
    

  
  
  
  

Template Sequence  SGREMGVIAAMRD. . GFGFIKCVDRDVRMFFHFSEIL. . DGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLP
Template Known Secondary structure 




T..TB
SSSSS



BTTGGG..GS



TT



B

SSS



B

S


Template Predicted Secondary structure 



..








..

















Template SS confidence 








































































   6...10........ .20.........30.........40 .........50.........60.........70....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions