Job Description P0ABH9 Confidence 99.77% Date Thu Jan 5 11:15:32 GMT 2012 Rank 61 Aligned Residues 249 % Identity 18% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	.	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L
Query Conservation																																				.
Alig confidence																																				.																							.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.													.
Template Sequence		L	E	Q	K	Y	R	P	S	T	I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	.	.	.	.	.	.	.	.	.	.	N	A	D	M	M	F	V	N	G	S	D	C	.
Template Known Secondary structure		S	T	T	T	S			S	S	T	T	T	S																	S	S									S	S	S		S	S												T	.	.	.	.	.	.	.	.	.	.	T								G	G	G		.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	.	S	G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I	F	E
Query Conservation																																																												.	.
Alig confidence		.	.	.																																		.	.	.	.	.	.	.	.															.	.												.	.	.	.	.
Template Conservation		.	.	.																																		.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		.	.	.	K	I	D	F	V	R	G	P	L	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	.	.	.	.	.	.	.	.	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	A	Y	S	S	N	C	S	I	I	I	T	A	N	.	.	.	.	.	N	I	D	G
Template Known Secondary structure		.	.	.							T								S			T	T										S				G	.	.	.	.	.	.	.	.	G	G														T	T	T	T								S	.	.	.	.	.		G	G	G
Template Predicted Secondary structure		.	.	.																																		.	.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	.	.	.	.	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E	A	G	A	R
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.																		.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		I	I	K	P	L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	N	F	P	D	F	.	.	.	.	.	.	R	K	T	I	G	E	L	D	S	Y	S	S	K
Template Known Secondary structure		S								S					T	T																										T				S		S										T		S			.	.	.	.	.	.										T		T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	M	P	V	S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V	A	R	I	A	R	I	P	E	K	S	V	S	Q	S	D	R	D	T	L	K	N	L	G	D	R	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	L	D	A	G	I	L	S	L	V	T	N	D	R	G	A	I	D	D	V	L	E	S	L	K	N	K	D	V	K	Q	L	R	A	L	A	P	K	Y	A	A	D	Y	S	W	F	V	G
Template Known Secondary structure		S				T	T						T	T														T	T		S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions