Job Description P0ABH9 Confidence 99.74% Date Thu Jan 5 11:15:32 GMT 2012 Rank 65 Aligned Residues 366 % Identity 16% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E
Query Conservation
Alig confidence																	.	.																				.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																	.	.																				.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		A	T	L	T	D	S	L	H	Q	K	Y	G	G	C	F	.	.	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	.	.	.	.	.	.	.	.	.	.	G	R	V	V	V	V	F	N	C	D	D	.	.	.	.	.	.	.	.	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I	T
Template Known Secondary structure										T	T	T	T				.	.				T	T	S	S									T	S	S		.	.	.	.	.	.	.	.	.	.										S	S	.	.	.	.	.	.	.	.	S	S		S
Template Predicted Secondary structure																	.	.																				.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.			.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.											.	.	.	.	.	.	1820	.	.	.	.									.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I	F	E	K
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.												.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation					.												.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	G	.	A	W	G	C	F	D	E	F	N	R	L	.	.	.	.	.	.	.	.	.	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure		T	T		.							T	T	T	T	S	.	.	.	.	.	.	.	.	.	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.												.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1840	.	.		.	.	.	.	.	.	.	1850	.	.	.										.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.											.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E	A	G	A	R	A	R	L	M	P
Query Conservation
Alig confidence															.																.	.	.	.
Template Conservation															.																.	.	.	.
Template Sequence		P	E	N	L	K	K	S	F	R	E	F	S	M	.	K	S	Q	S	G	T	I	A	E	M	I	L	Q	I	M	.	.	.	.	G	F	E	D	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	S	M	N	H	Y	H	F	G	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I
Template Known Secondary structure							T	T	T						.																.	.	.	.		T	S	S																					S	S	S
Template Predicted Secondary structure															.																.	.	.	.
Template SS confidence
		1909	1910	.	.	.	.	.	.	.	.	.	1920	.		.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.					.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V	A	R	I	A	R	I	P	E	K	S	V	S	Q	S	D	R	D	T	L	K	N	L	G	D	R	L	K	M	L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F
Query Conservation
Alig confidence							.	.	.														.	.	.																																																	.	.	.	.
Template Conservation							.	.	.														.	.	.																																																	.	.	.	.
Template Sequence		S	E	F	G	E	.	.	.	G	E	K	T	V	V	E	S	L	K	R	V	I	.	.	.	L	P	S	L	G	D	T	D	E	L	V	F	K	D	E	L	S	K	S	K	A	I	V	Q	C	L	K	D	A	G	E	E	F	L	K	K	C	M	Q	F	Y	Y	M	Q	K	T	Q	Q	.	.	.	.	A	L	I	L
Template Known Secondary structure				S	S		.	.	.	S	S												.	.	.		S	S	S	S	T	T																																						S	S			.	.	.	.
Template Predicted Secondary structure							.	.	.														.	.	.																																																	.	.	.	.
Template SS confidence
		1985	.	.	.	.				1990	.	.	.	.	.	.	.	.	.	2000	.	.				.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050					.	.	.	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.					.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.											.	.	.	.
Predicted Secondary structure																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	.	.	.	.	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R	H	T	V	S	R	L	I	G	A	P	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	K	.	.	.	.	.	.	.	.	.	.	H	P	H	A
Query Conservation																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.										.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.
Template Sequence		V	G	K	A	G	C	G	K	T	A	T	W	K	T	V	I	D	A	M	A	I	F	D	G	H	A	N	V	V	Y	V	I	.	.	D	T	K	V	L	T	K	E	S	L	Y	G	S	M	L	K	A	T	L	E	W	R	D	G	L	F	T	S	I	L	R	R	V	N	D	D	I	T	G	T	F	K	N	S	R	I
Template Known Secondary structure					T	T	S	S	T	T													T	S	S									.	.		S	S	S		T	T	S	S	S	S	S	S				S	S	T	T																S	S			S	S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		2073	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.			.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.			.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		V	L	L	L	D	E	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	.	.	T	T	N	A	G	V	R	E	T	E	R	K	S	I	G	L	I	H	Q	D	N	S	T	D	A	M	E	E	I	K	K	I	F	T
Query Conservation																																														.	.
Alig confidence								.	.																.	.	.	.	.																	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	V	V	F	D	S	.	.	D	L	D	P	E	Y	V	E	A	M	N	S	V	L	D	.	.	.	.	.	D	N	K	G	E	R	L	P	I	P	P	N	F	R	I	L	F	E	T	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	H	T	T
Template Known Secondary structure						S	S	.	.		S		S	T	T							T	T		.	.	.	.	.	B						B												S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure								.	.																.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2151	.	.	.	.	.			.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.						.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.																											.	.	.	.	.
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	F	R	N	R	L	D	N	I	I	W	F	D	H
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		P	A	T	I	T	R	C	.	G	L	L	W	F	S	S
Template Known Secondary structure				T	T	S			.
Template Predicted Secondary structure									.
Template SS confidence
		2204	.	.	.	.	.	2210		.	.	.	.	.	.	.