Job Description P0ABH9 Confidence 100.00% Date Thu Jan 5 11:15:32 GMT 2012 Rank 3 Aligned Residues 642 % Identity 42% Template c3pxiB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc Resolution 6.93 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		L	N	Q	E	L	E	L	S	L	N	M	A	F	A	R	A	R	E	H	R	H	E	F	M	T	V	E	H	L	L	L	A	L	L	.	.	S	N	P	S	A	R	E	A	L	E	A	C	S	V	D	L	V	A	L	R	Q	E	L	E	A	F	I	E	Q	T	T	P	V	L	P	A	S	E	E	E	R	D	T	Q
Query Conservation																																				.	.
Alig confidence																																				.	.																															.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.
Template Sequence		F	T	E	R	A	Q	K	V	L	A	L	A	Q	E	E	A	L	R	L	G	H	N	N	I	G	T	E	H	I	L	L	G	L	V	R	E	G	E	G	I	A	A	K	A	L	Q	A	L	G	L	G	S	E	K	I	Q	K	E	V	E	S	L	I	G	R	G	.	.	.	.	.	.	Q	E	M	S	Q	T	I	H
Template Known Secondary structure		B																		T	T		S														S			S										T												T	T	S				.	.	.	.	.	.		T	T		S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	S	F	Q	R	V	L	Q	R	A	V	F	H	V	Q	S	S	G	R	N	E	V	T	G	A	N	V	L	V	A	I	F	S	E	Q	E	S	Q	A	A	Y	L	L	R	K	H	E	V	S	R	L	D	V	V	N	F	I	S	H	G	T	R	K	D	E	P	T	Q	S	S	D	P	G	S	Q	P	N	S
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	P	R	A	K	K	V	I	E	L	S	M	D	E	A	R	K	L	G	H	S	Y	V	G	T	E	H	I	L	L	G	L	I	R	E	G	E	G	V	A	A	R	V	L	N	N	L	G	V	S	L	N	K	A	R	Q	Q	V	L	Q	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			T	T	T		S	S	B												T			S									T	T												T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	A	G	G	E	E	R	M	E	N	F	T	T	N	L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	S	N	A	N	T	P	T	L	D	S	L	A	R	D	L	T	A	I	A	K	E	D	S	L	D	P	V	I	G	R	S	K	E	I	Q	R	V	I	E	V	L	S	R	R	T	K	N	N	P	V	L	I	G	E	P	G	V	G	K	T	A	I	A	E	G	L	A	Q	Q	I	I	N	N	E	V	P	E	I
Template Known Secondary structure					T	T					T	S	T	T	T		B					T	T	S	S							S		S										T	T		S	S	S		S					S	S	S	S	S	S	T													S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	S	G	K	I	R	V	I
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	D	K	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	L	E	D	R	L	K	K	V	M	D	E	I	R	Q	A	G	N	I	I	L	F	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	S	L	A	R	G	E	L	Q	C	I
Template Known Secondary structure				S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T						T	T	T	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.																240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																						.	.	.	.	270	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	T	T	Y	Q	E	F	S	N	I	F	E	K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	T	T	L	D	E	Y	R	K	Y	I	E	K	D	A	A	L	E	R	R	F	Q	P	I	Q	V	D	Q	P	S	V	D	E	S	I	Q	I	L	Q	G	L	R	D	R	Y	E	A	H	H	R	V	S	I	T	D	D	A	I	E	A	A	V	K	L	S	D	R	Y	I	S	D	R	F	L	P	D	K	A	I
Template Known Secondary structure						T	T	T	T					T	T		S	S	S	S	S	S																										G	G	G	S	S		S																S	S			S		T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.																																																						420	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	I	D	E	A	G	A	R	A	R	L	M	P	V	S	K	R	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	N	V	A	D	I
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	I	D	E	A	G	S	K	V	R	L	R	S	F	T	P	N	L	K	E	L	E	Q	K	L	D	E	V	R	K	E	K	D	A	A	V	Q	S	Q	E	F	E	K	A	A	S	L	R	D	T	E	Q	R	L	R	E	Q	V	E	D	T	K	K	S	W	K	E	K	Q	G	Q	E	E	V	T	V	D	D	I
Template Known Secondary structure																				T	T																		T	T			S																			T	T	T	G	G	G						T				T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	V	V	A	R	I	A	R	I	P	E	K	S	V	S	Q	S	D	R	D	T	L	K	N	L	G	D	R	L	K	M	L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		A	M	V	V	S	S	W	T	A	.	.	.	.	.	.	.	Q	T	E	T	D	K	L	L	N	M	E	N	I	L	H	S	R	V	I	G	Q	D	E	A	V	V	A	V	A	K	A	V	R	R	A	R	A	G	L	K	D	P	K	R	P	I	G	S	F	I	F	L	G	P	T	G	V	G	K	T	E	L	A	R
Template Known Secondary structure											.	.	.	.	.	.	.									T							T	T	S		S																T	T	T		S		T	T	S		S							S		T	T	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.								.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.				.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		Q	L	S	K	A	L	G	I	E	.	.	.	L	L	R	F	D	M	S	E	Y	M	E	R	H	T	V	S	R	L	I	G	A	P	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	K	H	P	H	A	V	L	L	L	D	E	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N
Query Conservation											.	.	.
Alig confidence											.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	A	E	S	I	F	G	D	E	E	S	M	I	R	I	D	M	S	E	Y	M	E	K	H	S	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	E	K	V	R	R	K	P	Y	S	V	V	L	L	D	A	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	E	D
Template Known Secondary structure									S		T	T							G	G	G	G		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S							G	G	G	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.																		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G	V	R	E	T	E	R	K	S	I	G	L	I	H	Q	D	N	S	T	D	A	M	E	E	I	K	K	I	F	T	P	E	F	R	N	R	L	D	N	I	I	W	F	D	H	L	S	T	D	V	I	H	Q	V	V	D
Query Conservation
Alig confidence							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		G	R	L	T	T	.	.	.	.	.	V	D	F	R	N	T	I	L	I	M	T	S	N	V	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	K	D	K	V	M	G	E	L	K	R	A	F	R	P	E	F	I	N	R	I	D	E	I	I	V	F	H	E	K	.	.	K	H	L	T	E	I	V	S
Template Known Secondary structure		S	B				.	.	.	.	.		B		T	T								S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T													S						T	T	S	S									.	.
Template Predicted Secondary structure							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		637	.	.	640	.						.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.														.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.			.	690	.	.	.	.	.	.
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	I	V	E	L	Q	V	Q	L	D	Q	K	G	V	S	L	E	V	S	Q	E	A	R	N	W	L	A	E	K	G	Y	D	R	A	M	G	A	R	P	M	A	R	V	I	Q	D	N	L	K	K	P	L	A	N	E	L	L	F	G	S	L	V	D	G	G	Q	V	T	V	A	L	D	K	E	K	N	E	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	S	D	Q	L	T	K	R	L	K	E	Q	D	L	S	I	E	L	T	D	A	A	K	A	K	V	A	E	E	G	V	D	L	E	Y	G	A	R	P	L	R	R	A	I	Q	K	H	V	E	D	R	L	S	E	E	L	L	R	G	N	I	H	K	G	Q	H	I	V	L	D	V	E	D	G	E	F	V	V	K
Template Known Secondary structure													T	T	T															G	G	G			T	T	T	T	T	T	T									T										T	T		S		S	S	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
		744	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		805	.