Job Description P0ABH9 Confidence 96.45% Date Thu Jan 5 11:15:32 GMT 2012 Rank 344 Aligned Residues 137 % Identity 18% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.																														.	.	.	.	.	.	.	.	230	.		.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	E	G	L	A	W	R	I	.	V	Q	G	D	V
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																.	.	.	.	.
Template Sequence		P	V	K	K	F	E	S	E	I	L	E	A	I	S	.	.	.	.	.	Q	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R	R	I	S	A	V	S	V	A	E	R	V	A	F	E	R	G	E
Template Known Secondary structure		G	G	G	G	G										.	.	.	.	.			S								T	T	S	S																T	T		G	G	G								S	S														T	T	T
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.						.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	S	G	K
Query Conservation																																																																														.
Alig confidence																																							.															.	.	.	.	.	.																			.
Template Conservation																																							.															.	.	.	.	.	.
Template Sequence		E	P	G	K	S	C	G	Y	S	V	R	F	E	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	.	G	I	R	G	I	S	H	V	I	V	D	E	I	H	.	.	.	.	.	.	E	R	D	I	N	T	D	F	L	L	V	V	L	R	D	V	V	Q	A	Y	P	E
Template Known Secondary structure			T	T	S	S						T	T							S	S	S																	.			T	T									T	T	.	.	.	.	.	.	S																				T	T
Template Predicted Secondary structure																																							.															.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.							.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		316	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		I	R	V	I	G	.	.	.	S	T	T	Y	Q	E	F	S	N	I	F	E	K	D	R
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence		V	R	I	V	L	X	S	A	T	I	D	T	S	X	F	C	E	Y	F	F	N	C	P
Template Known Secondary structure		S							S	S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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