Job Description P0ABH9 Confidence 96.65% Date Thu Jan 5 11:15:32 GMT 2012 Rank 323 Aligned Residues 121 % Identity 19% Template c3l0oB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima Resolution 2.35 Å

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		197	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.																.	.	.	.	.	.	.
Predicted Secondary structure									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query SS confidence									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query Sequence		R	A	I	Q	V	L	C	.	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	G	T	K	Y	.
Query Conservation									.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Alig confidence									.																																	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																										.	.	.	.	.
Template Sequence		R	L	I	D	L	F	A	P	I	G	K	G	Q	R	G	M	I	V	A	P	P	K	A	G	K	T	T	I	L	K	E	I	A	N	G	I	A	E	N	H	.	.	.	.	.	P	D	T	I	R	I	I	L	L	I	D	E	R	P	E	E	V	T	D	I	R	E	S	T	N	A	I	V	I	A	A	P	F	D	M
Template Known Secondary structure								S			B	T	T									T	T	S	S																	.	.	.	.	.	T	T	S																			T	T	S		S							T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.											.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.								.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	.	.	.	.	.	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	.	.	.	.	.	.	.	.	.	.	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	S	.	.	.	.	.	.	.	G	K	I	R
Query Conservation																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	D	K	Q	V	K	V	A	E	L	T	L	E	M	A	K	R	L	V	E	F	N	Y	D	V	V	I	L	L	D	S	L	T	R	L	A	R	V	Y	N	I	V	V	P	P	S	G	K	L	L	T	G	G	V	D	P	A	A	L	Y	K	P	K	R	F	F	G	A	A	R	N	T	R	E	G	G	S	L	T
Template Known Secondary structure																							T	T																					S		S		S	S			S	S	S			T	T	T	T	S	T						T	T		B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		318	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	A	T	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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