Job Description P0ABH9 Confidence 98.40% Date Thu Jan 5 11:15:32 GMT 2012 Rank 112 Aligned Residues 173 % Identity 14% Template c3iytG_ PDB info PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Resolution 9.50 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																					.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																					.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	.	.	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	.	.	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.																					.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																					.	.									.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.
Template Sequence		V	V	F	V	T	R	K	K	L	V	N	A	I	Q	Q	K	L	S	K	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	S	L	L	E	G	C	F	P	.	.	.	G	G	V	H	W	V	S	V	G	K	Q	D	K	S	G	L	L	M	K	L	Q
Template Known Secondary structure		S	S																T	T	S	T	T	S										T	T	S	S																				T	.	.	.	T									S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.	.	.																														.
Query SS confidence		.	.	.	.	.	.																														.
Query Sequence		.	.	.	.	.	.	I	G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	.	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	S	G	K	I	R	V	I	G	S	T
Query Conservation		.	.	.	.	.	.																														.
Alig confidence		.	.	.	.	.	.																														.												.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		N	L	C	T	R	L	D	Q	D	E	S	F	S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	V	L	K	A	F	.	.	D	S	Q	C	Q	I	L	L	T	T
Template Known Secondary structure									S	S			S		S	S				S															T		T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	.	.		S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.															.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	Q	E	F	S	N	I	F	E	K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K
Query Conservation
Alig confidence			.	.	.	.	.																																					.	.	.	.	.
Template Conservation			.	.	.	.	.																																					.	.	.	.	.
Template Sequence		R	.	.	.	.	.	D	K	S	V	T	D	S	V	M	G	P	K	Y	V	V	P	V	E	S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	.	.	.	.	.	K	K	A	D	L	P	E	Q	A	H	S	I	I	K	E	C	K	G
Template Known Secondary structure		S	.	.	.	.	.		G	G	G	G	T	T			S																									T		.	.	.	.	.		S	T	T			T										T	T
Template Predicted Secondary structure			.	.	.	.	.																																					.	.	.	.	.
Template SS confidence
		265						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions