Job Description P0ABH9 Confidence 100.00% Date Thu Jan 5 11:15:32 GMT 2012 Rank 5 Aligned Residues 453 % Identity 21% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.														.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	D	D	I	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.	.	.	.	.	.	.	.	.	G	A	F	F	F	L	I	N	G
Template Known Secondary structure			G	G	G			S													T	T	T	T	T		T	T	T	T	T	T													S		T	T	S														.	.	.	.	.	.	.	.	.	.	T								T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.											.	.	.	.	.	.	.	270	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	.	.	.	.	.	.	A	A	N	L	I	K	P	L	L	S	S	G	K	I	R	V	I	G	S	T	T	Y
Query Conservation																																																						.	.	.	.	.	.
Alig confidence							.	.																																														.	.	.	.	.	.
Template Conservation							.	.
Template Sequence		P	E	I	M	S	.	.	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R
Template Known Secondary structure		T					.	.	S		T	T																T		S							T	G	G	G	T				S	S				S															T	T	T	T	S	T	T									S
Template Predicted Secondary structure							.	.
Template SS confidence
		272	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	F	S	N	I	F	E	K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E
Query Conservation
Alig confidence														.	.																																			.	.	.	.	.
Template Conservation														.	.																																			.	.	.	.	.
Template Sequence		P	N	S	I	D	P	A	L	R	R	F	G	.	.	R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	K	N	M	K	L	A	D	D	V	D	.	.	.	.	.	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A
Template Known Secondary structure		T	T	T	S		G	G	G		S	T	T	.	.	S	S																						S	S	S	S				T	T			.	.	.	.	.						T	T		T	T			T	T
Template Predicted Secondary structure														.	.																																			.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		405	.	.	.	.	410	.									.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																																																																.	.
Query SS confidence									.	.	.	.	.	.	.	.																																																																.	.
Query Sequence		A	G	A	R	A	R	L	.	.	.	.	.	.	.	.	M	P	V	S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V	A	R	I	A	R	I	P	E	K	S	V	S	Q	S	D	R	D	T	L	K	N	L	G	D	R	L	K	M	L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	.	.
Query Conservation									.	.	.	.	.	.	.	.																																																																.	.
Alig confidence									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.																																		.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		I	R	K	K	M	D	L	I	D	L	E	D	E	T	I	D	A	E	V	M	N	S	L	A	V	T	M	D	D	F	R	W	A	L	S	Q	S	N	.	.	.	.	.	.	.	P	S	A	L	R	E	T	V	V	E	V	P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y
Template Known Secondary structure									T	T			S	S																										.	.	.	.	.	.	.			S			S										T	T	T	T		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460								.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
				475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.			.	550
Predicted Secondary structure		.	.																																																																											.	.
Query SS confidence		.	.																																																																											.	.
Query Sequence		.	.	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R	H	T	V	S	R	L	I	G	A	P	P	G	Y	V	G	F	D	Q	G	G	L	.	.	L	T
Query Conservation		.	.																																																																											.	.
Alig confidence		.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	.	.	.	.	.	.	.	.	.	.	.	.	W	F	G	E	S	E	A	N	V	R	E	I	F
Template Known Secondary structure											T	S						S								T	T	S													T	T															.	.	.	.	.	.	.	.	.	.	.	.		T	T	T		T							T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550													.	.	.	.	.	.	.	.	.	560	.	.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.															.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	V	I	K	H	P	H	A	V	L	L	L	D	E	I	E	K	A	H	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G	V	R	E	T	E	R	K	S
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.	S		T	T	S	S								S		G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610										.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.			.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		I	G	L	I	H	Q	D	N	S	T	D	A	M	E	E	I	K	K	I	F	T	P	E	F	R	N	.	.	R	L	D	N	I	I	W	F	D	H	L	S	T	D	V	I	H	Q	V	V	D	K	F	I	V	E	L	Q	V	Q	L	D	Q	K	G	V	S	L	E	V	S	Q	E	A	R	N	W	L	A	E	K	G
Query Conservation																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																											.	.	.	.	.	.	.									.	.	.								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.									.	.	.								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K	.	.	.	.	.	.	.	S	P	V	A	K	D	V	D	.	.	.	L	E	F	L	A	K	M	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	S	T	T	T	S											T	T										T	T	T	.	.	.	.	.	.	.	S		B		S	S			.	.	.					T	T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.									.	.	.								.
Template SS confidence
																					629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.								.	.	.	.	.	.	670	.				.	.	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	R	A	M	G	A	R	P	M	A	R	V	I	Q	D	N	L	K	K	P	L	A	N	E	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I
Template Known Secondary structure		.		S	S															T	T
Template Predicted Secondary structure		.
Template SS confidence
			679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.