Job Description P0ABH9 Confidence 97.85% Date Thu Jan 5 11:15:32 GMT 2012 Rank 143 Aligned Residues 142 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.						.	530	.	.	.	.
Predicted Secondary structure																																																				.	.	.																	.	.	.	.	.
Query SS confidence																																																				.	.	.																	.	.	.	.	.
Query Sequence		Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	.	.	.	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R	H	.	.	.	.	.	T	V	S	R	L	I
Query Conservation																																																				.	.	.																	.	.	.	.	.
Alig confidence																																																				.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I
Template Known Secondary structure																S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		535	.	.				.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.		.	.	560	.	.	.	.	.	.	.			.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																					.											.	.
Query SS confidence					.	.	.																					.											.	.
Query Sequence		G	A	P	.	.	.	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	K	H	P	.	H	A	V	L	L	L	D	E	I	E	.	.	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G
Query Conservation					.	.	.																					.											.	.
Alig confidence					.	.	.																					.											.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	.	.	.	.	.	.	.	.	.	.	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G
Template Known Secondary structure		S							S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	.	.	.	.	.	.	.	.	.	.	S	S			S								G	G	G	G
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.											.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		609	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	T	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	A	G	I	Q
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions