 |
Job Description | P0ABH9 | Confidence | 97.47% | Date | Thu Jan 5 11:15:32 GMT 2012 |
Rank | 204 | Aligned Residues | 105 |
% Identity | 13% | Template | c2recB_ |
PDB info |
PDB header:helicase | PDB COMPND: | |
Resolution | UNK |
|
 |
  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |
|  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | L | L | V | G | E | S | G | V | G | K | T | A | I | A | E | G | L | A | W | R | I | V | Q | G | D | V | P | E | V | M | A | D | C | T | I | Y | S | L | D | I | G | S | L | L | A | G | T | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Y | R | G | D | F | E | K | R | F | K | A | L | L | K | Q | L | E |
Query Conservation |   |
  |
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |   |
|
|   |   |   |
|   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
V | E | I | Y | G | P | E | S | S | G | K | T | T | L | T | L | Q | V | I | A | A | A | Q | R | . |
. |
. |
. |
. |
. |
. |
E | G | K | T | C | A | F | I | D | A | E | H | A | L | D | P | I | Y | A | R | K | L | G | V | D | I | D | N | L | L | C | S | Q | P | D | T | G | E | Q | A | L | E | I | C | D | A | L | A | R |
Template Known Secondary structure |   |
 |  |
|
|
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T | T |
|
|  |  |  |  |
| S | S |
|
|
|
|  |  |  |  |  |  | T | T |
|
| T | T | T |
|  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
62 | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | |
|
|
|
. | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | D | T | N | S | I | L | F | I | D | E | I | H | T | I | I | G | A | G | A | A | S | G | G | Q | V | D | . |
. |
. |
. |
A | A | N | L | I | K | P | L | L | S | S | G | K | I | R | V | I | G | S |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|   |   |   |
|   |
|
|   |
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
S | G | A | V | D | V | I | V | V | D | S | V | A | A | L | T | P | K | A | E | I | E | G | L | A | A | R | M | M | S | Q | A | M | R | K | L | A | G | N | L | K | Q | S | N | T | L | L | I | F | I |
Template Known Secondary structure |   |
 | T |
|
|
|  |  |  |  | S |
| T | T | S |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|