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Job DescriptionP0ABH9
Confidence99.59%DateThu Jan 5 11:15:32 GMT 2012
Rank89Aligned Residues229
% Identity17%Templatec2qbyB_
PDB info PDB header:replication/dnaChain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
Resolution3.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DPLIGREKELERAIQVLCR. . . . RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE. VMADCTIYSLDIGSLLAGTK. .
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Template Sequence  KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV
Template Known Secondary structure  SS
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   259260.........270.........280.........290.........300.........310.. .......320...
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Query Sequence  . . . . . . . . . . . . . . YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS. SGKIRVIGSTT
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Template Sequence  LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLV. . . . . . . KRRGGDIVLYQLLRSDANISVIMISN
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   110.........120.........130.........140.........150...... ...160.........170.........180..
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID
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Template Sequence  DINVRDYMEP. RVLSSLGPSVIFKPYDAEQLKFILSKYAEY. . GLIKGTYDDEILSYIAAISAKEHGD. . . ARKAVNLLF
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   183......190.. .......200.........210.........220.. .......230.........240....... ..250......
 
   404.....410.........420.........430...
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Query Sequence  EAGARARLMPVSKRKKTVNVADIESVVARI
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Template Sequence  RAAQ. . . . . . LASGGGIIRKEHVDKAIVDY
Template Known Secondary structure  ......TTSSS


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   257..260 .........270.........280
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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