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Job DescriptionP0ABH9
Confidence99.68%DateThu Jan 5 11:15:32 GMT 2012
Rank79Aligned Residues302
% Identity18%Templatec2qbyA_
PDB info PDB header:replication/dnaChain: A: PDB Molecule:cell division control protein 6 homolog 1; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
Resolution3.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200..... ....210.........220.........230.........240.........250...
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Query Sequence  DPLIGREKELERAIQVLCRR. . . . RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL. . . . . . . .
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Template Sequence  DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG. . . . KFKHVYINTRQIDTPYRVLA
Template Known Secondary structure  S

TT
SSGGGGGT





TTSST
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S
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   31........40.........50.........60.........70.........80...... ...90.........100......
 
   254.....260.........270........ .280.........290.........300.........310.........320.....
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Query Sequence  . . . . . . . LAGTKYRGDFEKRFKALLKQLEQDT. NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ
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Template Sequence  DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY. . . . NDDILYKLSRINSEVNKISFIGITNDV
Template Known Secondary structure  TTTTS



SSS

T

S
TSS....
STS


S
G
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   107..110.........120.........130.........140.........150..... ....160.........170.........180..
 
   326...330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA
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Template Sequence  KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM. . AFKPGVLPDNVIKLCAALAAREHGD. . . ARRALDLLRVS
Template Known Secondary structure  GGGGG
TTTTTT



..B
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   185....190.........200.........210.........220... ......230.........240........ .250.........
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  GARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEH
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Template Sequence  GEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISVSTTGAVYETYLNICKKL. . . . . . . . . . .
Template Known Secondary structure  TT
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   260.........270.........280.........290.........300.........310.........320........
 
   486...490.........500.........510.........520
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Query Sequence  KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFD
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Template Sequence  . . . . . . . . . GVEAVTQRRVSDIINELDMVGILTAK
Template Known Secondary structure  .........T




TS
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   334.....340.........350.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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