Job Description P0ABH9 Confidence 98.04% Date Thu Jan 5 11:15:32 GMT 2012 Rank 124 Aligned Residues 153 % Identity 16% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.			.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																																			.	.
Query SS confidence																													.	.																																			.	.
Query Sequence		L	G	D	R	L	K	M	L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	.	.	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	.	.	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R
Query Conservation																													.	.																																			.	.
Alig confidence																													.	.																																			.	.
Template Conservation
Template Sequence		L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P
Template Known Secondary structure				T	T	T	T	T		S																		T	T	S	S								S	S									T	T	S	S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		528	.	530	.	.	.									.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.				.	.	.	.	.	560	.	.	.	.	.	.	.			.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.																						.	.	.														.	.
Query SS confidence								.	.	.	.	.	.	.	.																						.	.	.														.	.
Query Sequence		H	T	V	S	R	L	.	.	.	.	.	.	.	.	I	G	A	P	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	.	.	.	K	H	P	H	A	V	L	L	L	D	E	I	E	.	.	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A
Query Conservation								.	.	.	.	.	.	.	.																						.	.	.														.	.
Alig confidence								.	.	.	.	.	.	.	.																						.	.	.														.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	.	.	.	.	.	.	.	.	.	.	V	L
Template Known Secondary structure															T								T	T																		T		S										S	S															.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.											.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	R	N	V	V	L	V	M	T	T	N	A	G	V	R	E	T	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V
Template Known Secondary structure				S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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