Job Description P0ABH9 Confidence 99.78% Date Thu Jan 5 11:15:32 GMT 2012 Rank 58 Aligned Residues 216 % Identity 19% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		W	V	E	K	Y	R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	.	.	.	.	.	.	.	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E
Template Known Secondary structure						T	S		S	S	G	G	G			S														T	T									S		T	T	S	S													.	.	.	.	.	.	.		G	G	G	T	G	G	G						T	T		T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	.	S	G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I	F	E	K
Query Conservation																																																											.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.														.	.												.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		R	G	I	D	V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	.	.	.	.	.	.	.	.	.	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	.	.	.	.	.	Y	V	S	R	I
Template Known Secondary structure		T														T	S			S	T	T		S								T	G	G	G	S	.	.	.	.	.	.	.	.	.																T	T	T								S	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E	A	G	A	R	A	R	L	M	P
Query Conservation
Alig confidence																																	.	.	.	.																						.	.	.	.	.	.																	.	.
Template Conservation																																	.	.	.	.																						.	.	.	.	.	.																	.	.
Template Sequence		I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	.	.	.	.	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	.	.	.	.	.	.	R	K	A	I	N	A	L	Q	G	A	A	A	I	G	E	V	.	.
Template Known Secondary structure								T																									.	.	.	.		T																T	T			.	.	.	.	.	.												T	T		S		.	.
Template Predicted Secondary structure																																	.	.	.	.																						.	.	.	.	.	.																	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	D	A	D	T	I	Y	Q	I	T	A
Template Known Secondary structure		.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									214	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions