Job Description P0ABH9 Confidence 99.89% Date Thu Jan 5 11:15:32 GMT 2012 Rank 30 Aligned Residues 221 % Identity 19% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.				.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	G	I	E	.	.	.	L	L	R	F	D	M	S	E	Y	M	E	R	H	T	V	S	R	L	I	G	A
Query Conservation																																																										.	.	.
Alig confidence																				.	.	.	.	.	.	.																																.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	.	.	.	.	.	.	.	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H
Template Known Secondary structure																				.	.	.	.	.	.	.	T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.								.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	K	H	P	H	A	V	L	L	L	D	E	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G	V	R	E	T	E	R	K	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	A	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.					B							T	T	T	S						S	G	G	G	S															S						S	S	S														S	S				.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.	.
Template SS confidence
										81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.			.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		I	G	L	I	H	Q	D	N	S	T	D	A	M	E	E	I	K	K	I	F	T	P	E	F	R	N	R	L	D	N	I	I	W	F	D	H	L	S	T	D	V	I	H	Q	V	V	D	K	F	I	V	E	L	Q	V	Q	L	D	Q	K	G	V	S	L	E	.	.	V	S	Q	E	A	R	N	W	L	A	E	K	G
Query Conservation																																																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.						T	S	S										S								G	G	G	S																			T	T		S	S				B											.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																																			.	.
Template SS confidence
														154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	R	A	M	G	A	R	P	M	A	R	V	I	Q	D	N	L	K	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H
Template Known Secondary structure		S			T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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