Job Description P0ABH9 Confidence 99.66% Date Thu Jan 5 11:15:32 GMT 2012 Rank 81 Aligned Residues 225 % Identity 14% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L
Query Conservation
Alig confidence																																																																	.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		P	W	V	E	K	Y	R	P	K	N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	.	.	.	.	K	S	R	I	L	E	L	N	A	S	D	E	R
Template Known Secondary structure							T			S	S	T	T	T			S			T	T								T	T		T	T									S	T	T	S	S																			.	.	.	.	T	T	S						S	S	S
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.
		255	.	.	.	.	260	.	.	.	.	.	.	.									.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																																														.	.
Query SS confidence															.	.	.	.	.	.	.	.																																														.	.
Query Sequence		A	G	T	K	Y	R	G	D	F	E	K	R	F	.	.	.	.	.	.	.	.	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	.	S	G	K	I	R	V	I	G	S	T	T	Y
Query Conservation															.	.	.	.	.	.	.	.																																														.	.
Alig confidence															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.														.	.												.
Template Conservation																																														.	.	.	.	.	.	.	.	.																											.
Template Sequence		G	I	S	I	V	R	E	K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	.	.	.	.	.	.	.	.	.	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	G	V	T	R	F	C	L	I	C	N	.
Template Known Secondary structure							T	T								S							T	T					S				S							T	T	G	G	G	S	.	.	.	.	.	.	.	.	.															T	T	T	T								S	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	F	S	N	I	F	E	K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E
Query Conservation
Alig confidence		.	.	.	.																																					.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																					.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	Y	V	T	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	.	.	.	.	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	A	G	.	.	.	.	.	.	.	.	.	D	L	R	R	G	I	T	L
Template Known Secondary structure		.	.	.	.		G	G	G	S								S																							T	.	.	.	.	T	T															T	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																					.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
						172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	R	A	R	L	M	P	V	S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	S	A	S	K	G	A	Q	Y	L	G	D	G	K	N	I	T	S	T	Q	V	E	E	L	A
Template Known Secondary structure					T									S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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