Job Description P0ABH9 Confidence 99.74% Date Thu Jan 5 11:15:32 GMT 2012 Rank 64 Aligned Residues 192 % Identity 16% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	N	L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S
Query Conservation
Alig confidence																																																																	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.
Template Sequence		N	L	P	W	V	E	K	Y	R	P	E	T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	.	.	.	.	.	Y	S	N	M	V	L	E	L	N	A	S	D
Template Known Secondary structure									T			S	S	G	G	G			S														T	T										S	S	S	S	S														T	T	S	.	.	.	.	.										T	T	S
Template Predicted Secondary structure																																																																	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	.	S	G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I
Query Conservation																																																														.	.
Alig confidence																	.	.																						.	.	.	.	.	.	.	.	.														.	.												.	.	.	.	.
Template Conservation																	.	.																						.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		D	R	G	I	D	V	V	R	N	Q	I	K	D	F	A	.	.	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	.	.	.	.	.	.	.	.	.	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	K	N	T	R	F	C	V	L	A	N	.	.	.	.	.	Y	A
Template Known Secondary structure				S						T							.	.		S			S	S	S		S							T	T	G	G	G	S	.	.	.	.	.	.	.	.	.															T	T	T	T								S	.	.	.	.	.		G
Template Predicted Secondary structure																	.	.																						.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.										.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	D	R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I
Query Conservation
Alig confidence																																				.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		H	K	L	T	P	A	L	L	S	Q	C	T	R	F	R	F	Q	P	L	P	Q	E	A	I	E	R	R	I	A	N	V	L	V	H	.	.	.	.	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M
Template Known Secondary structure		G	G	S						T	T	S																							T	.	.	.	.	T	T			B													T	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions