Job Description P0ABH9 Confidence 99.72% Date Thu Jan 5 11:15:32 GMT 2012 Rank 69 Aligned Residues 262 % Identity 15% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V	M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A	G
Query Conservation
Alig confidence																																																														.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		V	E	K	Y	R	P	Q	V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	.	.	.	.	.	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I
Template Known Secondary structure					T			S	S	G	G	G			S		T												S											S	T	T	S	S														G	G	G		.	.	.	.	.									T	T	S			S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	A	A	N	L	I	K	P	L	L	S	.	.	S	G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I	F	E	K	D
Query Conservation																																																										.	.
Alig confidence													.																							.	.	.	.	.	.	.	.	.														.	.												.	.	.	.	.
Template Conservation													.																							.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		D	V	V	R	N	Q	I	K	H	F	A	.	Q	K	K	L	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	.	.	.	.	.	.	.	.	.	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	N	S	T	R	F	A	F	A	C	N	.	.	.	.	.	Q	S	N	K	I	I
Template Known Secondary structure						T							.								T	T									S	G	G	G	S	.	.	.	.	.	.	.	.	.							T	T							T	T	T	T								S	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure													.																							.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	A	R	R	F	Q	K	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y	I	N	D	R	H	L	P	D	K	A	I	D	V	I	D	E	A	G	A	R	A	R	L	M	P	V
Query Conservation
Alig confidence																																.	.	.	.																						.	.	.	.	.	.
Template Conservation																																.	.	.	.																						.	.	.	.	.	.
Template Sequence		E	P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	.	.	.	.	E	D	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	E	G	D	M	.	.	.	.	.	.	R	Q	A	I	N	N	L	Q	S	T	V	A	G	H	G	L	V	N	A
Template Known Secondary structure						T	T	S																								.	.	.	.		T			B													T	T			.	.	.	.	.	.															S	S	B
Template Predicted Secondary structure																																.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	K	K	T	V	N	V	A	D	I	E	S	V	V	A	R	I	A	R	I	P	E	K	S	V	S	Q	S	D	R	D	T	L	K	N	L	G	D	R	L	K	M	L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K
Query Conservation
Alig confidence																						.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		D	N	V	F	K	I	V	D	S	P	H	P	L	I	V	K	K	M	L	L	.	.	.	.	.	.	.	A	S	N	L	E	D	S	I	Q	I	L	R	T	D	L	W	K	K	G	Y	S	S	I	D	I	V	T	T	S	F	R	V	T	K
Template Known Secondary structure									T	S											S	.	.	.	.	.	.	.		S	S											T	T	T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions