Job Description P0ABH9 Confidence 97.86% Date Thu Jan 5 11:15:32 GMT 2012 Rank 138 Aligned Residues 146 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.						.	530	.	.	.	.
Predicted Secondary structure																																																				.	.	.																	.	.	.	.	.
Query SS confidence																																																				.	.	.																	.	.	.	.	.
Query Sequence		Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	L	.	.	.	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R	H	.	.	.	.	.	T	V	S	R	L	I
Query Conservation																																																				.	.	.																	.	.	.	.	.
Alig confidence																																																				.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I
Template Known Secondary structure													T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		535	.	.	.			.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.				.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																	.	.	.
Query SS confidence						.	.																	.	.	.
Query Sequence		G	A	P	P	.	.	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	.	.	.	K	H	P	H	A	V	L	L	L	D	E	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G	V
Query Conservation						.	.																	.	.	.
Alig confidence						.	.																	.	.	.																													.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	.	.	.	.	.	.	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q
Template Known Secondary structure		T							S	S				T	T													T	T		S									S			S	S	T										.	.	.	.	.	.									S								T	T	T	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	T	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	Y	D	L
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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