Job Description P0ABH9 Confidence 99.87% Date Thu Jan 5 11:15:32 GMT 2012 Rank 37 Aligned Residues 224 % Identity 20% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.				.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		L	V	F	G	Q	D	K	A	I	E	A	L	T	E	A	I	K	M	A	R	A	G	L	G	H	E	H	K	P	V	G	S	F	L	F	A	G	P	T	G	V	G	K	T	E	V	T	V	Q	L	S	K	A	.	.	.	L	G	I	E	L	L	R	F	D	M	S	E	Y	M	E	R	H	T	V	S	R	L	I	G
Query Conservation																																																							.	.	.
Alig confidence																					.	.	.	.	.	.	.																												.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		H	M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	.	.	.	.	.	.	.	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G
Template Known Secondary structure																					.	.	.	.	.	.	.		S	T	T									T	T	S	S												S	S		S	S	S								T	T											T
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.								.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	G	Y	V	G	F	D	Q	G	G	L	L	T	D	A	V	I	K	H	P	H	A	V	L	L	L	D	E	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	M	D	N	G	T	L	T	D	N	N	G	R	K	A	D	F	R	N	V	V	L	V	M	T	T	N	A	G	V	R	E	T	E	R	K
Query Conservation
Alig confidence																			.	.	.	.																																																							.	.	.	.	.
Template Conservation																			.	.	.	.																																																							.	.	.	.	.
Template Sequence		H	E	K	G	A	F	T	K	R	R	E	G	R	F	V	E	A	.	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	.	.	.	.	.
Template Known Secondary structure				S	S	S								T	T	G	G	G	.	.	.	.	T	T	S							G	G	G															S	S					S	S	S															S	S				.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.																																																							.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		S	I	G	L	I	H	Q	D	N	S	T	D	A	M	E	E	I	K	K	I	F	T	P	E	F	R	N	R	L	D	N	I	I	W	F	D	H	L	S	T	D	V	I	H	Q	V	V	D	K	F	I	V	E	L	Q	V	Q	L	D	Q	K	G	V	S	L	E	.	V	S	Q	E	A	R	N	W	L	A	E	K	G
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						T	S	S										S								G	G	G	G	G	G	G																T	T						B											.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Template SS confidence
															287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	R	A	M	G	A	R	P	M	A	R	V	I	Q	D	N	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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