Job Description P0ABH9 Confidence 99.83% Date Thu Jan 5 11:15:32 GMT 2012 Rank 48 Aligned Residues 195 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	F	T	T	N	L	N	Q	L	A	R	V	G	G	I	D	P	L	I	G	R	E	K	E	L	E	R	A	I	Q	V	L	C	.	.	.	.	.	.	.	.	.	.	R	R	R	K	N	N	P	L	L	V	G	E	S	G	V	G	K	T	A	I	A	E	G	L	A	W	R	I	V	Q	G	D	V	P	E	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence															.																					.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation															.																																																											.	.	.	.	.	.	.	.
Template Sequence		P	A	F	G	T	N	Q	E	D	Y	A	S	Y	.	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	T	T		B				T	T	T	T	.		T	T						S																					S	S		S									S	T	T	S	S													.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.																																																											.	.	.	.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.						.
Predicted Secondary structure																																																																	.											.	.	.	.	.
Query SS confidence																																																																	.											.	.	.	.	.
Query Sequence		M	A	D	C	T	I	Y	S	L	D	I	G	S	L	L	A	G	T	K	Y	R	G	D	F	E	K	R	F	K	A	L	L	K	Q	L	E	Q	D	T	N	S	I	L	F	I	D	E	I	H	T	I	I	G	A	G	A	A	S	G	G	Q	V	D	.	A	A	N	L	I	K	P	L	L	S	.	.	.	.	.	S
Query Conservation																																																																	.											.	.	.	.	.
Alig confidence		.	.																.																																														.											.	.	.	.	.
Template Conservation		.	.																.
Template Sequence		.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	.	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G
Template Known Secondary structure		.	.			S							G	G	G	S	T	T	.																			T	S	S													T	T		B	T	T	T	T	B													T	T				S	T	T
Template Predicted Secondary structure		.	.																.
Template SS confidence
				561	.	.	.	.	.	.	.	.	570	.	.	.	.	.		.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		G	K	I	R	V	I	G	S	T	T	Y	Q	E	F	S	N	I	F	E	K	D	R	A	L	A	R	R	F	Q	K	.	I	D	I	T	E	P	S	I	E	E	T	V	Q	I	I	N	G	L	K	P	K	Y	E	A	H	H	D	V	R	Y	T	A	K	A	V	R	A	A	V	E	L	A	V	K	Y
Query Conservation																																.
Alig confidence																			.	.	.	.										.																						.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.																																.	.	.	.	.	.	.	.
Template Sequence		R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E	.	.	.	.	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	.	.	.	.	.	.	.	.	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K
Template Known Secondary structure											S								.	.	.	.	T	T	G	G	G	T	S	S																						T		.	.	.	.	.	.	.	.	S													T	T	S
Template Predicted Secondary structure																			.	.	.	.																																.	.	.	.	.	.	.	.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.					.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.									.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions