Job Description P0CF30 Confidence 66.15% Date Thu Jan 5 11:30:52 GMT 2012 Rank 15 Aligned Residues 111 % Identity 13% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																		.	.	.	.
Query SS confidence																							.																																		.	.	.	.
Query Sequence		R	Q	R	W	L	F	Y	A	Y	D	S	L	R	K	T	V	V	A	H	V	F	.	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	.	.	.	.	R	L	K	G	K	L	H	V	I	S	K	R	Y	T	Q	R	I	E	R	H	N
Query Conservation																							.																																		.	.	.	.
Alig confidence																							.																																		.	.	.	.
Template Conservation
Template Sequence		N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	V	L	H	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E	N	L	C	K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q
Template Known Secondary structure		T	T									T	T	T	T								S	S	S																S			S						S						S										T	T						S	S		S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	L	H	D	K	V	I	G	H	Y	L	N	I	K	H	Y	Q
Query Conservation
Alig confidence																																			.	.
Template Conservation																																			.	.
Template Sequence		G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	T	V	E	A	A	L	S	L	A	L	V	.	.	S	L	N
Template Known Secondary structure																			G	G	G		S	S											.	.
Template Predicted Secondary structure																																			.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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