Job Description P0AFM2 Confidence 98.90% Date Thu Jan 5 11:26:43 GMT 2012 Rank 29 Aligned Residues 219 % Identity 12% Template d2nxoa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.04

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	.	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G
Query Conservation																																		.
Alig confidence																				.	.	.	.											.																										.	.	.	.
Template Conservation																				.	.	.	.																																					.	.	.	.
Template Sequence		T	R	P	R	V	G	H	I	Q	F	L	N	C	L	P	L	Y	W	.	.	.	.	G	L	A	R	T	G	T	L	L	D	F	E	L	T	K	D	T	P	E	K	L	S	E	Q	L	V	R	G	D	L	D	I	G	P	V	T	.	.	.	.	L	V	E	F	L	K	N	A	D	D	L	V	A	F	P	D	I	A
Template Known Secondary structure											S	G	G	G						.	.	.	.					T	S	G	G	G	G																	T	T	S		S						.	.	.	.							T	G	G	G
Template Predicted Secondary structure																				.	.	.	.																																					.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y
Query Conservation
Alig confidence																.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	C	D	G	P	V	M	S	C	V	I	V	S	.	.	.	.	.	.	.	Q	V	P	L	D	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	A	R	V	A	L	G	S	T	S	R	T	S	V	R	L	A	Q	L	L	L	S	E	R	F	G	V	Q	P	D	Y	Y	T	C	P	P
Template Known Secondary structure					S	S			S	S						.	.	.	.	.	.	.	S	S		T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S						T	T		S													T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.																.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E
Query Conservation
Alig confidence			.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	.	.	.	L	S	L	M	A	A	V	L	I	G	D	A	A	L	R	A	N	M	I	D	G	P	R	Y	G	L	D	V	H	D	L	G	A	L	W	K	E	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	F	V	F	A	V	W	A	A	R	R	D	Y	A	E
Template Known Secondary structure			.	.	.	S	S																	T					T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure			.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	P	V	I	T	R	K	V	.	.	.	.	.	.	.	.	.	.	.	.	H	E	A	F	L	A	.	.	.	.	.	.	.	.	.	.	.	.	S	R	N	L	S	L	E	E	V	E	K	V	A	E	Q	A	A	R
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.								T										T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.													.	.	.	.	210	.													.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions