Job Description P0AFM2 Confidence 98.10% Date Thu Jan 5 11:26:43 GMT 2012 Rank 32 Aligned Residues 213 % Identity 13% Template d2czla1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F
Query Conservation
Alig confidence										.																							.																									.	.	.	.	.
Template Conservation										.																							.																									.	.	.	.	.
Template Sequence		A	L	R	L	G	F	S	P	.	P	N	D	T	F	I	F	Y	A	L	V	H	G	R	V	E	S	P	V	P	L	E	.	P	V	L	E	D	V	E	T	L	N	R	W	A	L	E	G	R	L	P	L	T	K	L	S	.	.	.	.	.	Y	A	A	Y	A	Q	V	R	D	R	Y	V	A	L	R	S	G	G	A
Template Known Secondary structure										.												T	T	S	S			S	S				.															T	T			S						.	.	.	.	.					T	T		T	T	T					S	S	S
Template Predicted Secondary structure										.																							.																									.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.
Template Sequence		L	G	R	G	V	G	P	L	V	V	A	R	.	.	.	.	.	.	.	.	G	P	L	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	R	V	A	V	P	G	R	H	T	T	A	Y	F	L	L	S	L	Y	.	.	.	.	A	Q	G	F	V	P	V	E	V	R	.	.	.	.
Template Known Secondary structure				S	S								S	.	.	.	.	.	.	.	.	S			S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S		T	T	S										.	.	.	.		S	S								.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.									.	90	.	.	.	.																.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N
Query Conservation
Alig confidence		.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	Y	D	R	I	L	P	M	V	A	Q	G	E	V	E	A	G	L	I	I	H	E	S	R	F	T	Y	P	R	Y	G	L	V	Q	V	V	D	L	G	A	W	W	E	E	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	L	P	L	G	A	I	L	A	R	R	D	L	G	E	G	L
Template Known Secondary structure		.	G	G	G							T	T	S	S	S						T	T					G	G	G	G	T																S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											G	G	G
Template Predicted Secondary structure		.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		P	A	.	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E
Query Conservation				.
Alig confidence				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	A	L	D	E	A	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	Y	A	L	A	H	P	E	E	A	L	D	Y	M	R	A
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	G	G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.																													200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions