Job Description P0AFM2 Confidence 97.79% Date Thu Jan 5 11:26:43 GMT 2012 Rank 33 Aligned Residues 212 % Identity 10% Template d1zbma1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V
Query Conservation
Alig confidence																																.																									.	.	.	.	.
Template Conservation																																.																									.	.	.	.	.
Template Sequence		I	R	V	A	H	T	P	D	A	D	D	A	F	X	F	Y	A	X	T	H	G	K	V	D	T	W	L	E	I	E	.	H	V	I	E	D	I	E	T	L	N	R	K	A	F	N	A	E	Y	E	V	T	A	I	S	.	.	.	.	.	A	H	A	Y	A	L	L	D	D	K	Y	R	I	L	S	A	G	A	S	V
Template Known Secondary structure								S	S												T	T		S			S					.													G	G	G	T			S						.	.	.	.	.					T	T	S	T	T	T					S	S
Template Predicted Secondary structure																																.																									.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Sequence		G	D	G	Y	G	P	V	V	V	A	.	.	.	.	.	.	.	.	.	K	S	E	I	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	R	I	A	V	P	G	R	Y	T	T	A	N	L	L	L	K	L	A	.	.	.	.	.	V	E	D	F	E	P	V	E	X	P	F	D	R	I
Template Known Secondary structure			S	S								.	.	.	.	.	.	.	.	.	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S		T	T	S										.	.	.	.	.		S	S								G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.										.	.	.	90	.	.																.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P
Query Conservation
Alig confidence			.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	Q	A	V	L	D	E	E	V	D	A	G	L	L	I	H	E	G	Q	I	T	Y	A	D	Y	G	L	K	C	V	L	D	L	W	D	W	W	S	E	Q	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	L	P	L	G	L	N	A	I	R	R	D	L	S	V	E	V	Q
Template Known Secondary structure			.	.	.	.					T	T	S	S	S						S	G	G	G	G	T	G	G	G	G	T													T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T	S
Template Predicted Secondary structure			.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		271		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		A	.	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E
Query Conservation			.
Alig confidence			.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	F	L	R	A	X	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	A	F	A	I	E	N	P	D	E	A	I	E	Y	A	X	K
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S									G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.																													.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions