Job Description P0AFM2 Confidence 94.11% Date Thu Jan 5 11:26:43 GMT 2012 Rank 58 Aligned Residues 234 % Identity 10% Template d1xvxa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.53

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.																						.	.	.	.	.	.
Query Sequence		G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	.	.	.	.	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.																						.	.	.	.	.	.
Alig confidence											.	.																									.														.	.	.	.																						.	.	.	.	.	.
Template Conservation											.	.																									.
Template Sequence		S	N	D	S	G	I	V	V	Y	.	.	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	.	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P
Template Known Secondary structure					S						.	.			S																						.																	G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure											.	.																									.
Template SS confidence
		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
												96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	.	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E
Query Conservation		.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.																	.	.																	.											.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.																												.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	V	T	Q	A	Q	V	A	Q	E	Y	R	P	E	H	G	R	W	T	G	I	A	A	R	.	.	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	L	P	K	S	I	M	D	L	A	K	P	E	.	.	.	.	.	.	.	.	.	.	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q
Template Known Secondary structure										B		G	G	G	S		S	S	S	S								.	.								T	T	T	S		G	G	G	S		S	S	G	G	G	G	G	S	G	G	.	.	.	.	.	.	.	.	.	.	G	T	T	S					T	T	S
Template Predicted Secondary structure																												.	.																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		G	A	I	N	H	Q	L	A	A	Y	E	L	T	.	.	.	.	.	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	V	S	A	M	L	E	L	K	G	E	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	I	D	G	G	V	I	Y	H	Y	Y	R	F	V	D	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	K	T	G	E	N	S	G	K	T
Template Known Secondary structure																															S	S										T	T	S	S	S						T								T	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T	T	T	T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.													.	.	.	.	210	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q
Query Conservation
Alig confidence																											.	.	.
Template Conservation																											.	.	.
Template Sequence		Q	L	H	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	.	.	.	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L
Template Known Secondary structure								T	T		G	G	G										B	T	T		.	.	.	S	S													S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions