Job Description P0AFM2 Confidence 21.58% Date Thu Jan 5 11:26:43 GMT 2012 Rank 201 Aligned Residues 174 % Identity 13% Template d1xc1a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.51

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	.	.	.	.	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V
Query Conservation																																														.	.	.	.
Alig confidence																														.																.	.	.	.
Template Conservation																														.
Template Sequence		I	T	V	Y	N	G	Q	H	K	E	A	A	Q	A	V	A	D	A	F	T	R	A	T	G	I	K	V	K	.	L	N	S	A	K	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P	L	P	A	S	T	I	N
Template Known Secondary structure								S																						.															T	T		T	T	S	S		S					S											T	T		B
Template Predicted Secondary structure																														.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		109	110	.	.	.																	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		F	V	N	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	.	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	R	G	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	K	S	V	L	N	Y	A	T	P	K	W	K	.	.	.	.	.	.	.	.	.	.	N	R	I	G	Y	V	P	T	S	G	A	F	L	E	Q	I	V	A	I	V
Template Known Secondary structure			T			T	T	S				T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	S	S	G	G	G	T	.	.	.	.	.	.	.	.	.	.	T	T					T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130											.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		172	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		A	A	Y	E	L	T	.	.	.	.	.	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		K	L	K	G	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	G	K	P	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	F	A
Template Known Secondary structure																				S				S	S										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions