Job Description P0AFM2 Confidence 98.70% Date Thu Jan 5 11:26:43 GMT 2012 Rank 30 Aligned Residues 182 % Identity 13% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

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		28	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.
Predicted Secondary structure													.																		.	.																																								.	.	.	.	.	.
Query SS confidence													.																		.	.																																								.	.	.	.	.	.
Query Sequence		G	I	T	V	N	P	V	Q	S	T	I	.	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	.	.	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	.	.	.	.	.	.	E	A	A	G
Query Conservation													.																		.	.																																								.	.	.	.	.	.
Alig confidence													.																		.	.																																								.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	F	I	T	I	G	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F	E	G	K
Template Known Secondary structure												T	T	S	S																T	S	S									S											T	T	S		S															T		S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N
Query Conservation
Alig confidence																.											.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.											.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	K	T	I	R	A	L	A	A	L	Y	P	E	.	V	V	H	V	V	A	R	K	D	A	.	.	.	.	G	I	R	T	V	A	D	L	K	G	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L	T	F
Template Known Secondary structure				T	T											.								T	T	S	.	.	.	.	S		S	S	G	G	G	G	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T														T	T			G
Template Predicted Secondary structure																.											.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.															.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	.	.	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P
Query Conservation																																			.	.
Alig confidence													.	.																					.	.
Template Conservation													.	.
Template Sequence		D	D	L	G	Q	A	I	R	V	S	A	.	.	S	Q	G	I	Q	L	M	Q	D	K	R	A	D	A	L	F	Y	T	V	G	L	G	A	S	A	I	Q	Q	L	A	L	T	T	P	I	A	L	V	A	V	D
Template Known Secondary structure		G	G	S	S								.	.									T	T	S		S								T	T											S
Template Predicted Secondary structure													.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions