Job Description P0AFM2 Confidence 100.00% Date Thu Jan 5 11:26:43 GMT 2012 Rank 7 Aligned Residues 245 % Identity 15% Template d1sw5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	.	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	V	V	I	G	S	K	P	F	N	E	Q	Y	I	L	A	N	M	I	A	I	L	L	E	E	N	G	Y	K	A	E	V	K	E	G	L	G	G	T	L	V	N	Y	E	A	L	K	R	N	D	I	Q	L	Y	V	E	Y	T	G	T	A	Y	N	V	I	L	R	K	Q	P	P	E	L	W	D	Q	Q	Y	I
Template Known Secondary structure										S	S																	T	T							T	T			S											T	S	S	S												T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	E	V	K	K	G	L	L	E	A	D	G	V	V	V	A	A	K	L	G	F	R	D	D	Y	A	L	A	V	R	A	D	W	A	E	E	N	G	V	E	K	I	S	D	L	A	E	F	A	D	Q	L	V	F	G	S	D	P	E	F	A	S	R	P	D	G	L	.	.	.	.	.	.	.	.	.	.	P	Q
Template Known Secondary structure																																								T			B	G	G	G	G	T	T	T	G	G	G												S	T	T	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.											.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N
Query Conservation
Alig confidence											.	.	.	.	.																																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.																																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	K	V	Y	G	F	E	F	.	.	.	.	.	K	E	V	K	Q	M	E	P	T	L	M	Y	E	A	I	K	N	K	Q	V	D	V	I	P	A	Y	T	T	D	S	R	V	D	L	F	.	.	.	.	N	L	K	I	L	E	D	D	K	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T				.	.	.	.	.	S							G	G	G							T	T	S		S						T	T							T	.	.	.	.	T					B		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.																																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	.	.	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H
Query Conservation																																.	.
Alig confidence		.	.																	.												.	.																.	.	.
Template Conservation		.	.																	.																													.	.	.
Template Sequence		.	.	L	P	P	Y	D	A	I	I	I	V	N	G	N	T	A	K	.	D	E	K	L	I	S	V	L	K	L	L	E	D	R	I	D	T	D	T	M	R	A	L	N	Y	Q	Y	D	.	.	.	V	E	K	K	D	A	R	E	I	A	M	S	F	L	K	E	Q
Template Known Secondary structure		.	.	S											T	T	G	G	G	.										T	T	T	T																.	.	.	T	S
Template Predicted Secondary structure		.	.																	.																													.	.	.
Template SS confidence
				211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions