Job Description P0AFM2 Confidence 87.19% Date Thu Jan 5 11:26:43 GMT 2012 Rank 85 Aligned Residues 197 % Identity 11% Template d1ixca2 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	.	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G
Query Conservation																													.
Alig confidence																													.						.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	L	S	V	A	Y	F	G	T	P	I	Y	R	S	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	.	L	T	H	X	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	.	.	.	.	.	.	.	.	.	.	.	F	F	P	R	H	P	G	I	E	I	V
Template Known Secondary structure										S	G	G	G	G	T														T	T					.																T	S		S					S	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																			.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.												.	.	150	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	A	Q	E	D	L	Y	L	A	V	H	R	S	Q	S	G	K	F	G	K	T	C	K	L	A	D	L	R	A	V	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	L	F	P	R	G	G	R	P	S	F	A	D	E	V	I	G	L	F	K	H	A	G	I	E	P	R	I	A	R	V	V	E	D	A
Template Known Secondary structure														G	G	G	G	G	G	T		S				G	G	G	G	T	T					.	.	.	.	.	.	.	.	.	.	.	.					S	S	S	S													T	T										S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.													.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E
Query Conservation
Alig confidence						.	.	.	.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation						.	.	.	.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		T	A	A	L	.	.	.	.	A	L	T	X	A	G	A	A	S	S	I	V	.	.	.	P	A	S	V	A	A	I	R	W	P	D	I	A	F	A	R	I	V	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	K	V	P	I	S	C	I	F	R	K	E	.	.	K
Template Known Secondary structure						.	.	.	.					T	T	S		B				.	.	.						T	S			T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											S	S	.	.	S
Template Predicted Secondary structure						.	.	.	.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		227	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																						.	.	.	.	.	.	.	270	.	.	.	.	.			.
		268	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	P	A	A	A	K	L	F	A	I	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	P	I	L	A	R	F	V	E	H	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions