Job Description P0AFM2 Confidence 99.76% Date Thu Jan 5 11:26:43 GMT 2012 Rank 10 Aligned Residues 226 % Identity 16% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																		.	.	.	.	.	.															.	.	.	.											.	.	.
Query SS confidence																		.	.	.	.	.	.															.	.	.	.											.	.	.
Query Sequence		G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	.	.	.	.	.	.	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	.	.	.	.	G	Y	T	V	N	K	P	S	E	V	.	.	.	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N
Query Conservation																		.	.	.	.	.	.															.	.	.	.											.	.	.
Alig confidence																		.	.	.	.	.	.															.	.	.	.											.	.	.
Template Conservation
Template Sequence		E	D	L	K	V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	L	R	K	Q	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L
Template Known Secondary structure																	T	T						T								S	S								T	T										T	T												T	T									S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A
Query Conservation
Alig confidence					.	.	.	.																									.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																									.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	S	.	.	.	.	K	P	T	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	S	.	.	.	.	T	A	K	S	I	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q
Template Known Secondary structure					.	.	.	.	S																					T	T		.	.	.	.				S	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						T	T	S	T
Template Predicted Secondary structure					.	.	.	.																									.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.																140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F
Query Conservation
Alig confidence																		.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	G	L	T	F	K	D	F	K	I	V	N	V	N	P	.	.	.	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T			G	G	G	S								.	.	.										T	S	S	S					S	T	T							T	T	S							G	G	G	S		G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G
Query Conservation
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	.	.	.	.	.	.	.	.	.	.	.	.	V	T	A	Y	L	K	.	.	.	.	.	.	.	.	.	.	.	.	S	V	H	W	V	A	Q	D	E	N	K	E	T	Y
Template Known Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.							S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.													.	.	.	.	.	.													250	.	.	.	.	.	.	.	.	.	260	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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